KEGG   Clostridium botulinum E3: CLH_0469
Entry
CLH_0469          CDS       T00767                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
cbt  Clostridium botulinum E3
Pathway
cbt03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cbt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CLH_0469 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cbt03021]
    CLH_0469 (rho)
   03019 Messenger RNA biogenesis [BR:cbt03019]
    CLH_0469 (rho)
Transcription machinery [BR:cbt03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     CLH_0469 (rho)
Messenger RNA biogenesis [BR:cbt03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     CLH_0469 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N Spore_III_AA NACHT AAA AAA_22 AAA_25 AAA_14
Other DBs
NCBI-ProteinID: ACD53672
Position
473822..475462
AA seq 546 aa
MTKQVYEGMTLVELKDIAKKLEIKNISKYKKKELIDEILKSSPNTVEKEGVILREKISSK
VRNDNNSVISSTTTNNNRTNFNNNTVNNSGFNNNTVNNSGFNNNNSNFNNNSSNNNSFNN
SNRSFNNSNNLSNSVNNNNSDNKIDAKNNEENPALKQEKLNNMISESNSAKGILEILENN
NFGFLRCKNYLTSSEDIYVSPSQIRRFNLRTGDEVQGKVREAKEGEKFKALLFVEQVNGE
HPEKAIGRKYFETLTPIYPKERLRLETSDEKDLSSRLMDIICPIGKGQRGIIVAPPKAGK
TTLLKKVAQNISTNYPDIKLIVLLIDERPEEVTDMKRSIKGEVIYSTFDEEPQNHAKVSR
IVLERAKRMVEQGKDVVILMDSITRLSRAYNLTITPTGRTLSGGLDPGALIMPKKFFGAA
RNIEEGGSLTILATALVDTGSRMDDMIFEEFKGTGNMEVHLDRKLQERRIFPAIDIYKSG
TRKEDLIFSKEEKDVAYTIRKVMYRDGNIEDVTENLIGMLSKTSDNKEFINVFKKVEFEK
RKQNNK
NT seq 1641 nt   +upstreamnt  +downstreamnt
ttgacaaagcaagtatatgaaggcatgactttagttgaattaaaggatattgcaaaaaaa
ttagaaataaaaaatatatcaaaatataaaaagaaagaattaatagatgaaattttaaaa
agttcacctaatacagtggaaaaagaaggtgttatattaagggaaaagatatcttcaaaa
gtaagaaatgataataattctgttattagtagtactactacgaataataataggactaat
tttaacaacaatactgtaaataatagtggttttaataacaatactgtaaataatagtggt
tttaataacaataatagtaattttaataataattctagtaacaacaatagctttaacaat
agcaatagaagttttaataatagtaataatttaagcaatagtgtaaataataataattca
gataataagattgatgctaaaaataatgaggagaatccagcattaaaacaagaaaagcta
aataacatgataagtgaatctaatagtgctaagggtattttagagatattagaaaacaat
aatttcggttttttaagatgtaaaaattatttaactagtagtgaagatatttatgtttca
ccttctcaaattagaagatttaatttaagaacaggtgatgaagtacaaggtaaagtgaga
gaagcaaaagaaggagaaaaatttaaagctcttttatttgttgaacaggtaaatggtgaa
catcctgaaaaagcgataggaagaaaatattttgaaacgctaacaccaatttatcctaaa
gaaagattaagacttgaaacttcggatgaaaaggatttatcatcaagacttatggatata
atttgtcctataggtaaggggcaaagaggaattatagtagctccgccgaaagcaggaaaa
acaactttattaaaaaaagtagctcaaaatatatctacaaattatcctgatataaagcta
atagttcttcttatcgatgaaagaccggaagaagttacagatatgaagagatctataaaa
ggagaggtaatatattcaacatttgatgaagaacctcaaaatcatgctaaggtatcaaga
atagtgttggaaagagctaaaagaatggttgagcaaggtaaagatgttgtgattcttatg
gacagtataactaggttatcaagagcgtacaacctaacaataacaccaacaggaagaact
ttatcagggggattagatccaggtgcattgataatgcctaaaaagttctttggagctgca
agaaatattgaagagggtggaagtttaactattttagcaacagctcttgtagatacagga
tctagaatggatgatatgatatttgaggaatttaaaggaacaggaaatatggaagttcat
cttgatagaaaattacaagaaagaaggatattcccagctattgatatttataaatcagga
actagaaaagaagacttaatattctctaaagaagaaaaagatgtagcgtatacaataaga
aaagttatgtatagagacggaaatatagaggatgtgacagaaaatcttataggtatgtta
tctaaaacttcagataataaagaatttataaatgtatttaagaaagtagaatttgaaaaa
agaaagcaaaataataaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (17)   

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