KEGG T00767: CLH

Clostridium botulinum E3: CLH_3339

Entry

CLH_3339          CDS       T00767

Symbol

rhlE

Name

(GenBank) ATP-dependent RNA helicase RhlE

K11927

ATP-dependent RNA helicase RhlE [EC:5.6.2.7]

Organism

cbt Clostridium botulinum E3

Pathway

cbt03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:cbt00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CLH_3339 (rhlE)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbt03019]
    CLH_3339 (rhlE)
Enzymes [BR:cbt01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CLH_3339 (rhlE)
Messenger RNA biogenesis [BR:cbt03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CLH_3339 (rhlE)

SSDB

Motif

Pfam:

DEAD Helicase_C ResIII UTP25 CMS1 AAA_19 AAA_22 rpo132

Other DBs

NCBI-ProteinID:

ACD51298

Position

complement(3612723..3614021)

AA seq 432 aa
MLFKDLNIIEPIQKALTEAGYTNPTPIQEQSIPSLLEGKDFLGCAQTGTGKTAAFAIPVL
QNIAKNQNKSDKSRTIKALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQKPQTR
ILGEGVDILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKV
RQNLLFSATMPSEVKSLVNSILKDPVKVEVAPVSSTIDTITQGVYFVTKKDKKSLLVHLL
KDESIKSLLVFSRTKYGANNIVKDLAKTGTESQAIHGNKSQNARQLALSNFKEGKIRVLV
ATDIAARGIDVDGLSHVINYDLPDVPETYVHRIGRTGRAGNSGVAISFCDVDEKSSLKDI
EKTIGKNIPVMKNVEFERIAITREPAQRKEADKKTTDANKKPKRNWYGEKRRSQGNGGQQ
GKRQSGRTQQAR

NT seq 1299 nt +upstreamnt +downstreamnt
atgttatttaaagatttaaatataatagaaccaattcaaaaggctttaacagaagcagga
tatacaaatcctacaccaatacaagaacaatcaattccatcattattagaaggaaaagat
tttttaggatgtgcgcaaacaggtacaggtaagacagcagcgtttgctattcctgtttta
caaaacatagcaaaaaatcaaaataaatcagataaatcaagaacaataaaagctttaata
ttagcaccaactagagaattagcaattcaaatagaagagaattttactctttatagtaag
catactaatattaaaaatacagtaatatttggtggagtatcacaaaagcctcaaactaga
atattaggtgagggtgtagatatattaattgcaacaccaggtagattacttgatttaata
gatcaaaaatacattgatttaagcaatgttaagcattttgttttagatgaagctgaccgt
atgtttgatatgggaatggttcgtgatgttaagaaaatagtagctaagttaccaaaggtt
agacaaaatcttttattctctgctactatgccttcagaagttaagagcttagtaaacagt
attcttaaagatccagtaaaagttgaagtagcaccggtttcatcaactatagatactatt
actcaaggcgtatattttgttacaaagaaagataagaagtctttacttgttcacctactt
aaggatgaatctattaagtcattattagtattctcaagaacaaaatatggagcaaataat
attgtcaaagatcttgctaagactggaactgagtctcaagcaattcatggtaataaatct
caaaatgcaagacaacttgctttaagtaattttaaagaaggtaaaataagagttttagta
gcaactgatatagctgcaagaggaatagatgtagatggattatctcacgttataaattat
gacttacctgacgtaccagaaacttatgtacatagaattggaagaactggaagagctgga
aatagtggcgtagcaatatcattctgtgatgttgatgaaaaaagttcacttaaggatatt
gaaaaaacaataggaaaaaatattcctgtaatgaagaatgttgaatttgaaagaatagct
ataactagagaacctgctcaaaggaaagaagcagacaagaagactactgatgctaataaa
aagccaaaaagaaattggtatggtgaaaaaagaagaagccaaggcaatggtggtcaacaa
ggaaagagacaaagtggtagaactcaacaagctagataa

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (16)   

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