KEGG   Cajanus cajan (pigeon pea): 109797075
Entry
109797075         CDS       T04868                                 
Name
(RefSeq) exosome complex component RRP4 homolog
  KO
K03679  exosome complex component RRP4
Organism
ccaj  Cajanus cajan (pigeon pea)
Pathway
ccaj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccaj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109797075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccaj03019]
    109797075
Messenger RNA biogenesis [BR:ccaj03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     109797075
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     109797075
SSDB
Motif
Pfam: RRP4_S1 KH_6 ECR1_N RRP40_S1 EXOSC1 ATPgrasp_YheCD
Other DBs
NCBI-GeneID: 109797075
NCBI-ProteinID: XP_020212569
Position
3:complement(16272838..16274990)
AA seq 331 aa
MEREVRGIQLPLSQTQKVRLQKALEQLQSLSLKVNFDASVVVADSISVNHEDGVLKGHGT
ADLNGEVVATVCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVVEVAQKRWRLEINYSQD
AVLMLSSMNMPDGVQRRRTAVDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKL
TRGQLLRVSPYLVKRQKQHFHHLEEFGIDLILGCNGFIWVGEHIEAKDDMVEDQVNQSDP
QVLLPSKNSVSLEEQEKSYTTLETRKYICRAANAIRVLSTLGFNITLEIIKGIIDLSLSL
NLDIHDMLGSEFCVLVAEKEAERRSSNKKKR
NT seq 996 nt   +upstreamnt  +downstreamnt
atggagagagaagtgagagggatacagttaccgttaagccaaactcagaaggttcgtctt
cagaaggctctagaacagttacagtctctgtcattgaaggtgaatttcgatgcttcggtg
gtcgtcgccgattccatctccgtcaaccacgaagacggcgttctcaaggggcacggaacc
gccgacctcaacggcgaagtcgtcgccaccgtctgcggcgtcgttgagcgtgtcaacaaa
cttgtctacgtccgtgccttacgctcccggtataaacctgaggtcggtgacatcgttata
gggcgtgttgttgaggttgctcagaagcgttggagattggagataaattacagtcaggat
gcagttttgatgctttcttctatgaatatgcctgatggtgtccagaggcggaggaccgct
gtggacgagctaaacatgcgctgcatttttgaggagaatgatgttgtttgtgctgaagtt
cgtggtttccagcatgatggcttacaccttcaagcaaggagtcggaagtatggaaagctt
actagaggtcaactgcttagagtctcaccttatttagtgaagagacaaaaacaacatttc
catcatctggaggaatttggtattgatttgatacttggctgtaatgggttcatatgggtt
ggggaacatattgaagccaaagatgacatggtagaagatcaagtgaaccaatctgatcca
caagttctattgcctagtaaaaatagtgtgagtcttgaagaacaagagaaaagttataca
acattggagacaagaaaatacatatgcagagctgctaatgctattagagtattatcaacc
ttaggcttcaatattacattggaaatcatcaagggaattattgatctaagcctatctttg
aatcttgatatacatgatatgcttggttctgagttttgtgttctggttgccgaaaaagag
gcagaaaggagaagctcaaataaaaagaagcggtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (20)   

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