KEGG   Cajanus cajan (pigeon pea): 109798481
Entry
109798481         CDS       T04868                                 
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
  KO
K12605  CCR4-NOT transcription complex subunit 2
Organism
ccaj  Cajanus cajan (pigeon pea)
Pathway
ccaj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccaj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109798481
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccaj03019]
    109798481
Messenger RNA biogenesis [BR:ccaj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109798481
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     109798481
SSDB
Motif
Pfam: NOT2_3_5_C
Other DBs
NCBI-GeneID: 109798481
NCBI-ProteinID: XP_020214382
Position
4:complement(5155376..5163347)
AA seq 665 aa
MSGLLNSSLQSSLNGSASNLPDGAGRSFATSFSGQSGAASPIFHHTGAIQGLHNIHGSFN
VPNMPGTLASRNSTINNVPSGGVQQPTGSLSSGRFTSNNLPVALSQLSHGSSHGHSGVTN
RGGISVVGNPGFSSSTNGVGGSIPGILPTSAAVGNRNAVPGLGVSPILGNAGPRITSSVG
NMVGGGNIGRTGAGLSVPGLASRLNLGANSGSGGLGMQGQNRLMSGVLPQGSPQVISMLG
NSYPSAGGPLSQSHVQAVSNLNSMGMLNDVNTNDNSPFDINDFPQLTSRPSSAGGPQGQL
GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDMHQKEQLHDNAVPMMQS
QHFSMGRSAGFSLGGTYSSHRTQQQQHAPSVSSGNVSFSSVNNQDLLHLHGSDIFPSSHS
TYHSQTSGPPGIGLRPLNSPNTVSGMGSYDQLIQQYQQHQNQSQFRLQMSAVNQSFRDQG
MKSIQTAQSTPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPW
SDEPAKGDPEFNVPQCYYAKQPPSLHQGYFSKFSVETLFYIFYSMPKDEAQLYAANELYN
RGWFYHKEHRLWFIRVPNMEPLVKTNTYERGSYHCFEPSIFETVRKDNFVLHYEMLEKRP
HLPQH
NT seq 1998 nt   +upstreamnt  +downstreamnt
atgtcggggttacttaattcttcgttgcagtcttctctgaatggatctgcctcaaatctt
ccagatggtgctgggcggtcttttgctacatccttttctggtcagtctggtgcagcctcc
ccaatttttcatcacactggagctattcaaggattgcacaatattcatgggagctttaat
gttccaaacatgcctggtacacttgcatcaagaaactcaactataaataatgtaccatcg
gggggtgttcaacaacccactggaagcctttctagtggaagatttacatccaataatctt
ccagttgcattgtctcagctatctcatggaagctcccatggacattcaggagtcaccaat
agaggaggtataagtgttgtaggaaaccctggatttagtagtagcacaaatggagttggt
ggttctattcctgggattcttcctacatctgctgcagttggtaaccgaaatgctgttcca
ggattgggagtatccccaattttgggaaatgcaggtcctcgaatcacaagttctgtggga
aacatggttggaggaggaaatattggaaggactggtgcaggattgtctgtgcctggtctt
gcatctcgtctgaatttgggtgcaaacagtggatccggtggtttaggtatgcaaggacag
aatcgattgatgagtggtgtgcttccacaaggatctccacaggtaatttcaatgctagga
aattcttatcctagtgctggaggtccactttcccaaagccatgttcaagcagtaagtaac
ttgaactctatggggatgttgaatgatgtgaataccaatgataattcaccttttgacatc
aatgacttccctcaactgacaagtcgtccgagttctgctggagggcctcaaggacagttg
ggttctttacggaaacagggtcttggtgttagtcccattgttcaacaaaaccaagagttt
agcattcaaaatgaggatttcccagctttaccaggattcaaaggtggtaatgcagattat
gctatggatatgcaccagaaagaacaacttcatgacaatgccgtgccaatgatgcaatct
cagcatttctctatgggaaggtcagctggtttcagcttagggggtacatattcatcacat
cgaacacaacagcaacagcatgctccttcagtcagtagtggcaatgtctctttttcatct
gttaacaaccaggatcttctccatctacatggatcagatattttcccatcttcacattca
acctatcattcacagaccagtggacctcctggcattggattaaggcctctaaattctcca
aatacagtttctggtatgggttcatatgaccagctcatccagcaatatcaacagcaccag
aaccagtcccagttccgccttcaaatgtcagctgtaaatcagtctttcagggatcaaggc
atgaagtctattcaaaccgcacaatctacaccagatccttttggtttgcttggcttgtta
agtgtgatcaggatgagtgatcccgacctgacatctcttgctcttggaattgatcttact
acactgggcttaaatttgaattcatcagaaaatcttcacaagacctttgggtctccatgg
tctgatgaaccagccaagggcgatccagagtttaatgtaccacaatgttattacgccaaa
cagccaccttctctacatcaaggttatttttccaagttttcggtggaaacattgttttac
atattttacagcatgcccaaagatgaagcacaattatatgccgctaatgagctttacaac
agaggttggttttatcacaaagaacatcgtttgtggtttataagagttcccaacatggag
ccgctggttaaaaccaacacatacgagagaggatcttatcactgtttcgaaccaagcata
tttgaaaccgtccgcaaggataattttgttcttcattatgaaatgttggaaaagagacca
catctgcctcaacattga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   RefSeq(pep) (6)   
DNA sequence (10)   
   RefSeq(nuc) (6)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (25)   

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