KEGG   Cajanus cajan (pigeon pea): 109809507
Entry
109809507         CDS       T04868                                 
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
ccaj  Cajanus cajan (pigeon pea)
Pathway
ccaj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccaj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109809507
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccaj03019]
    109809507
Enzymes [BR:ccaj01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     109809507
Messenger RNA biogenesis [BR:ccaj03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     109809507
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 109809507
NCBI-ProteinID: XP_020228429
Position
11:8018286..8022039
AA seq 617 aa
MASVLQLRSRRSLCTTSSSKWRVKQVTTSNFHESLEEIKTHISASDFVAISLGKTGSPSA
PSWLRPLPFDTAQTAYSKARRSAHRFQLLHFAVCPFSVTHSNHLIAHPYNFVLFPRDELK
MGMPAYSFSCQTSLLASMARQGFDFNACVYDGISYLSRAQESVARIRLGTALPSHPVMKS
STPSTVADTVFVERIRTRIKHWRNSCKSSDTNTSKHEELINSLKNIVLGSELFRSRPCMT
IDVCSERQVQLILEMLVDYSDDLLPLPIPTKSGTTNAVRIVLANSKEDKDLLERELQNFE
EEESKKIRGFREVIDLISASQKPVISHNCLNDCTLIHSKFIAPLPPEVDEFVSSLRSVFP
KVLDINYLMKKHGTMRKVTNIPSAMSYLNNHFFAPVDLEIPDQATVKEGKIHGLNALRLC
YLFMKLCSILKISPNVTESGNKHLAPELEDFTNVFHPCSAPIQDSSNGDVGVWTNNTKRV
GCEQLVFLWGFKFGMTAGMLKSVLRSSHDIFSGEFDVKLVDKSCAIVVFWQSGVSKEFMD
VMNSEEIRGDLKELVSDGLRVTGYDTYNTICRLGLWEMDLAVSLERALESSSCENNCEKK
SSEIHWYNDNVINLDDL
NT seq 1854 nt   +upstreamnt  +downstreamnt
atggcctcagtgttgcagttacggagtcgtcgttccctctgcaccacctcgtcctccaaa
tggagggttaagcaggtgacaacctccaacttccacgaatccctggaagagataaagacg
cacatctccgcctccgacttcgtcgccatatcattgggaaaaacgggctctccctcggcg
ccgtcgtggctccgccctctccccttcgacaccgcccaaaccgcctactccaaggcccgc
cgctccgcccaccgcttccagctcctccacttcgccgtctgccccttctccgtcacccat
tccaaccacctcatcgctcacccttataatttcgtgttgtttccgagagatgagttgaag
atggggatgcctgcttacagcttttcgtgccagacttcgcttctcgcctccatggcgcgc
caggggtttgatttcaatgcttgcgtctatgatggcatatcatatctatctagagcacaa
gagtcggtagctagaattcgtcttggaactgctctcccttctcatcctgtaatgaaatct
tctacaccctctactgttgccgatacagtttttgttgagaggattagaacacgcattaaa
cattggagaaactcatgtaaaagctcagacacaaacacaagcaaacatgaagaacttatc
aattcccttaagaatattgtcctgggaagtgaactgtttagatcaagaccttgcatgact
atagatgtttgcagtgaacgtcaagtgcagcttattttggagatgttggtagattactca
gatgatcttcttcctttgccaatccctacaaagagtggaaccactaatgcagtacgaatt
gttttggcaaattcaaaagaagacaaggatttgttggagagagagcttcaaaattttgaa
gaggaggagagcaagaaaattcgtggatttcgagaggtgatcgatttgatttctgcttca
cagaaacctgttatctcccacaattgccttaatgattgtacactaattcattcaaaattt
attgcaccacttccgcctgaggtagatgaatttgtgagctccttgcgctcagttttcccc
aaggtacttgacataaattatttgatgaagaaacatggaaccatgagaaaagtgaccaac
attccgagtgctatgtcctacttgaataatcatttctttgcacctgttgatttggaaatt
cctgaccaagctacagtaaaagaaggcaagattcatggacttaatgcattaaggctttgc
tatttatttatgaaactctgctctatattgaaaatttccccaaatgttactgaatctggt
aataagcatttggcccccgagcttgaagacttcaccaatgtattccatccatgctcagcc
cctattcaagattcatctaatggggatgttggcgtgtggaccaataatacaaaaagagtc
ggttgtgaacaattggttttcttatggggattcaaatttggtatgacagctggcatgctg
aagagtgtacttcgttcatcccatgatatcttttcaggagagtttgatgttaaattggtg
gataaaagttgtgccattgttgttttctggcaatctggggtatcaaaagaatttatggac
gtgatgaatagtgaagaaataaggggggacttaaaggagttggtgtcagatggcctgcgg
gtaactggttatgatacctacaacacgatatgcaggctaggtttgtgggagatggatctt
gcagtgtcattagaaagagccttggaaagttctagctgtgagaataattgtgagaaaaaa
tcttctgagattcattggtataatgacaatgtgattaacttggatgatctttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (17)   

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