KEGG   Cajanus cajan (pigeon pea): 109812609
Entry
109812609         CDS       T04868                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
ccaj  Cajanus cajan (pigeon pea)
Pathway
ccaj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccaj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109812609
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccaj03019]
    109812609
Messenger RNA biogenesis [BR:ccaj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109812609
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     109812609
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind DUF3819 CNOT1_TTP_bind
Other DBs
NCBI-GeneID: 109812609
NCBI-ProteinID: XP_020232225
Position
1:complement(11927306..11945400)
AA seq 1631 aa
MLQMFLFGSLALEQFVERLIEWPQYCNHILQISHLRNTHAEIIAFIEQGLARISSGHSDV
DGASHASVISNHHSAQATLGHVEQLSGPSVVQPGQQHLSLQLQQRRENPLDDRHKTSVGS
STDVKPLLSSLGQSSVLTPADASSTNKLHSTVSSSSMLSSASPGFVRPSRGATSTRFGSA
LNIETLVAAAEKREIPIEAPGSEVQDKILFIINNVSAANIEAKAKEFTEILKEQYYPWFA
QYMVMKRASIEPNFHDLYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSL
LKNLGSWLGKLTIGRNQVLRAREIDPKSLIMEAYEKGLMIAVIPFTSKVLEPCHNSLAYQ
PPNPWTMGILGLLAEIYSMPNLKMNLKFDIEVLFKNLLVDMKDVTPTSLLKDRKREIEGN
PDFSNKDVGASQAQMITDIKSGLVPPVNQVELPLEVTNPSNTGPHPHLLSQYAGPLHMSS
AALMEDEKVTPLGLSDQLPSAQGLLQATPSPAPFSISQLPTQIPNIGTHVIINQKLSGFG
LQMHFQRAVPIAMDRAIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRILNAAHLM
VASLAGSLAHVTCKEPLRASISGQLRTSLQNLNISNEILEQAVQLVTNDNLDLGCAVIEQ
AATDKAINTIDTEIGQQLSLRRKHREGMGSTFFDANLYPQGSMGGVPEPLRPKPGQLSLS
QQRVYEDFVRLPWQNQSSQSSHSLSPGVAVQSGNAGLSSTNGSVSGQINPGYPVSTGYEG
VSRPLDDMTESNLAPHFSAPSIHIRAADSVSQHSLEKDSVASFPSAASTPELHAVDSSDV
KESGTSQPLVTSGAVERLGSSFLEPSLTTRDALDKFQIVAQKLEAMVSNDSRDAEIQGVI
SEVPEIILRCVSRDEAALAVAQKVFKGLYDNASNNIHVSAHLAILTAIRDVCKLAVKELT
SWVIYSEEERKFNKEITVGLIRSELLNLTEYNVHMAKLIDGGRNKAATEFSISLLQILVI
EEPKVISELHNLVDALAKLATKPGCPESLQQLLEMLKNPASLSSSNAGKEDKARQSRDNK
GPGLLPANREEFNSIDSIEPDPAGFREQVSMLFTEWYRICELPGANDAASTHFILQLHQN
GLLKGDDLTDRFFRLLMELAVAHCLSSEMINSGSLQSQPLQAMSFLAIDIYAKLIFSVLK
GPNKLFLLSKVLAVTVRFIIKEAEEKKTSFNPRPLFRLFINWLLDLGSLEPVTDGANLQI
LTAFANAFHALQPLKVPAFSFAWLELISHRSFMPKMLTGNGQKGWPYIQRLLVDLFQFME
PFLRHAELGDPVRVLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAF
PRSMRLPDPSTPNLKIDLLQEITQSPRILSEVDAALKAKQMKADVDEYLKTRQQSSPFLS
ELKEKLLLSPNEAASAGTRYNVPLINSLVLYVGMQAIQQLQGTPHTQASANAFPLAVFSV
GAALDIFQTLIVDLDTEGRYLFLNAIANQLRYPNTNTHYFSFILLYLFAESNQEVIQEQI
TRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRTFIRCAPEIEKLFESVSRSCGGPK
PVDDSMVSAWV
NT seq 4896 nt   +upstreamnt  +downstreamnt
atgttacagatgtttttgtttggaagtctggcattggagcagtttgtggaacgtcttatt
gagtggcctcagtattgcaatcatattcttcaaatttcccatttgcgcaatacacatgca
gaaataattgctttcatcgaacagggtcttgccagaatttcctctggtcattcagatgtt
gatggggcgagtcatgcttctgtcattagtaaccatcattctgcacaggctacattaggg
catgtagagcagctgagcggccctagcgtcgtacaacctgggcagcaacatttgtcactg
cagcttcaacagagacgtgaaaatcccttggatgatcgtcacaaaacttctgttggttca
tctacagatgtgaaaccactgttatcttctctggggcaatcatcagtactaacacctgct
gatgcttctagtactaataagttacatagcacagtcagctcctcgtcaatgctgtcttct
gcttcacctggttttgttcgtccttcccgtggagctacttctaccaggtttggatctgcc
ttaaacattgaaacattggttgctgctgctgagaaaagagaaattcctattgaggctcca
gggtcagaggttcaggacaagatattatttataattaataatgtttctgctgctaatatt
gaagctaaagcaaaagagttcactgaaattttgaaagagcagtactatccttggtttgct
cagtatatggttatgaaaagagcaagcattgagccaaatttccatgacttgtacctgaaa
ttcctggataaggttaattcaaaggctttgaacaaagagatcgtccaggcaacatatgaa
aattgcaaggttcttttaggatcagagctcataaaatcaagttcagaggaacgttctttg
cttaaaaacttggggagttggcttgggaagttaacaattggccggaatcaggttttgagg
gctcgtgaaatagacccaaagtctttgattatggaggcatatgagaaggggctaatgatt
gctgttattccatttacttcaaaggtccttgaaccatgccataacagtcttgcttatcaa
cctcctaatccttggactatgggcattttaggattgcttgctgagatttattcaatgcca
aacttgaaaatgaacctcaagtttgacatagaggttttattcaaaaatcttcttgttgat
atgaaggatgtcacaccaacttctctcctgaaggatagaaaaagagaaattgaaggaaat
cctgatttctctaataaagacgttggggcatctcaagcacaaatgattactgatataaaa
tctggtcttgtacctccagtaaatcaagtggaattacctcttgaagtcaccaatccatct
aatacagggcctcatccacatctactgtctcagtatgctggtcctcttcatatgtcatcg
gcagcattgatggaagatgaaaaggttacacctctgggactgtctgatcaacttccctct
gctcaaggactgttacaagcaactccatccccagcacctttttctattagccagcttcca
acacagatacctaatatcgggactcatgttattatcaatcaaaaactcagtggttttggg
ttgcaaatgcattttcagagagcggtacccattgcaatggacagggctatcaaagagatt
gtgtctagtattgtgcagcgtagtgtttccatagcaactcaaacaaccaaagagcttgtt
ctaaaggattatgctatggaatctgatgagactcgtatattaaatgcggcacacttgatg
gttgctagtctagctgggagtttggctcatgttacctgcaaagaaccattacgggcatca
atatctggtcaactgaggacttctcttcagaacttaaatatatctaatgaaattttggaa
caagctgtgcaacttgtcaccaatgataatcttgatctaggctgtgccgttatcgaacag
gctgctactgataaggcaataaacaccattgatacagagattggtcaacaactctctttg
agaaggaagcatcgagaaggtatgggttctacattttttgatgccaatttgtatccacaa
ggttcaatgggtggtgttccagagcctcttcgccccaagcctggtcagttgtccctctca
caacagcgtgtctatgaggactttgttcggcttccctggcaaaaccagtctagccagagt
tcacattctctgtctcctggtgttgctgttcaatctggcaatgctggtctttctagcacc
aatggttctgtatcagggcaaattaaccctggttaccctgtgagcacaggatatgaagga
gtgtctcgaccattggatgatatgacagaatctaatttggctccacattttagtgctccc
tcaattcacattagagcagctgatagtgtttcccagcatagtttggagaaagactctgtt
gcctcatttccttcagctgcttccacccctgagttgcatgcggtggattcttcagatgtg
aaagaatctggaacttctcagccactagttacgtcaggtgctgtggagcgccttggaagc
agtttcttggagccttccctcactacaagagatgccctagataaattccaaattgtcgca
caaaagttggaagcaatggtcagcaatgattccagggatgcagaaatacagggtgtcatt
tctgaggttcctgagatcatactaagatgtgttagtcgagatgaggcagctttagctgtg
gctcaaaaggttttcaagggtttgtatgataatgcatcaaacaacattcatgtctctgct
catcttgcaattctgactgcaattcgtgatgtttgcaagcttgctgtcaaggagcttact
agttgggtaatttactcggaagaagaaaggaaatttaacaaagaaattactgttggcctc
atccgtagtgaattgctaaatcttaccgagtataatgttcatatggcaaaacttattgat
ggaggaaggaacaaggctgcaacggaattttccatttcccttcttcaaatcctggttatt
gaggaacctaaagttatttcagaacttcacaatcttgttgatgctttggctaagcttgct
acaaagcctggatgccctgagtcattacaacagcttcttgaaatgctcaagaatcctgct
tctctatcttctagtaatgctggaaaagaggataaggcaagacaatcaagagacaataag
ggtcctggtctgctacctgctaacagggaagagttcaacagcatagattctattgaacca
gatcctgctgggttccgggagcaggtttccatgttgtttacagaatggtataggatatgt
gaacttcctggtgccaatgatgcagcttctactcatttcatcttacaattgcatcagaat
gggcttcttaagggagatgatcttacagatcgttttttccgactgttgatggaactagct
gttgcacattgcttatcctctgagatgattaattcagggtcactgcaatctcaaccgctg
caggcaatgtcatttcttgcaattgatatttatgcaaagcttatcttctcagtcttgaag
ggaccaaacaaactctttcttctttccaaggttctggcagttactgtcagattcattata
aaagaagcagaggagaagaagacctcttttaatccaaggccacttttcagattattcatc
aactggcttctagatcttggttcacttgagcctgttactgatggtgcaaatctccagatt
ttgactgcttttgccaatgcatttcatgctttgcagcccctcaaagttcctgcattcagc
tttgcatggcttgagttgattagtcacaggagcttcatgccaaaaatgttgactggtaat
ggtcaaaaaggttggccttatatccaaaggttgcttgtagatctgttccaatttatggag
ccttttctgaggcatgctgaacttggagacccggttcgtgtcctttataaaggcacactc
agggtgctcttagtgctacttcacgacttccctgagtttctttgtgactatcactttacc
ttttgtgatgttattcctccaagttgcattcagatgagaaatataattctaagtgcattt
ccgcgtagtatgaggctgccagatccatctactcctaatttgaagattgatttgcttcaa
gaaataacccaatcaccccgcattctttctgaggttgatgcagctcttaaggcaaagcag
atgaaggctgatgtagacgaataccttaagacaaggcaacaaagttctccatttttatct
gaattgaaagagaagctgcttctctcacccaatgaagctgcctctgctgggactcggtac
aatgttccattaatcaactcactcgtgctatatgttggaatgcaggcaatccagcagctt
cagggaactccccatacacaagcatcagcaaatgctttcccattagccgtattttctgtt
ggtgctgcattggatattttccagacactaattgtggacttggacactgaaggacgctac
cttttcctaaatgctattgctaaccaactgcgttatcctaacactaatacacactacttt
tccttcatccttctctacttgtttgcagaatcaaaccaggaagttatccaagaacaaatt
actagggtcttgttagaacgcctaattgttaaccgtcctcatccctggggcctcctcatt
acctttattgagctgatcaagaatcctaggtataatttctggaaccggactttcataaga
tgtgcgccggagattgaaaaactttttgaatcagtgtcaagatcttgtggaggtccaaaa
ccagttgatgatagtatggtctcggcttgggtctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (20)   

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