KEGG   Cajanus cajan (pigeon pea): 109813612
Entry
109813612         CDS       T04868                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
ccaj  Cajanus cajan (pigeon pea)
Pathway
ccaj03018  RNA degradation
ccaj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccaj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109813612
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109813612
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccaj03019]
    109813612
   03041 Spliceosome [BR:ccaj03041]
    109813612
Messenger RNA biogenesis [BR:ccaj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109813612
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     109813612
Spliceosome [BR:ccaj03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    109813612
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 109813612
NCBI-ProteinID: XP_020233419
Position
Unknown
AA seq 98 aa
MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH
NT seq 297 nt   +upstreamnt  +downstreamnt
atgtcagctggtcctggacttgagtctcttgtagatcagacaatttcagtcattacaaat
gatggacgaaatatagtgggagtcctcaaaggttttgaccaggcgacaaatataattctt
gatgagtcccatgaacgagtttattctacaaaggaaggtgtgcaacaactagttctaggt
ctgtacatcatcaggggcgacaacataagcgttgttggtgaacttgatgaagatctggat
tctagtctggatttgtcaaaactcagagctcatcccttgaaacctgtaatccattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (9)   
   RefSeq(nuc) (5)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (26)   

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