KEGG   Castor canadensis (American beaver): 109681322
Entry
109681322         CDS       T04791                                 
Symbol
Pabpc1l
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
  KO
K13126  polyadenylate-binding protein
Organism
ccan  Castor canadensis (American beaver)
Pathway
ccan03015  mRNA surveillance pathway
ccan03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccan00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    109681322 (Pabpc1l)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109681322 (Pabpc1l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccan03019]
    109681322 (Pabpc1l)
   03041 Spliceosome [BR:ccan03041]
    109681322 (Pabpc1l)
Messenger RNA biogenesis [BR:ccan03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     109681322 (Pabpc1l)
   mRNA cycle factors
    Stress granule specific factors
     109681322 (Pabpc1l)
Spliceosome [BR:ccan03041]
 Complex C
  Other components
   Complex C specific factors
    109681322 (Pabpc1l)
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_7 RRM_occluded Nup35_RRM DUF4504
Other DBs
NCBI-GeneID: 109681322
NCBI-ProteinID: XP_020011619
UniProt: A0A8B7TVM4
Position
Unknown
AA seq 629 aa
MAAAAGRGPEMPITCARGWRPQVRRGRRPRLRGPGAVKARRAGCGRDGRGQPTMNAGGQG
YPLASLYVGDLHPDVTEAMLYETFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER
ALDTMNFEVIKGQPIRIMWSHRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILS
CKVVCNEQGSRGFGFVHFETHEAAQQAISTMNGMLLNDRKVYVGHFKSRREREAELGARA
LEFTNIYVKSLHADMDEQGLQDLFSQFGKTLSVKVMRDSSGRSRGFGFVNFEKHEEAQKA
VDQMNGKEVSGRLLYVGRAQKRAERQNELKRRFEQMKQDRQNRYQGVNLYVKNLDDSIND
EKLRKVFSPYGVITSAKVMTEGSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL
AQRKEERKAILTNQYMQRLSTVQALDHPLLGSFQQPTSYFLPAVPQPPAQAAYYDSGSIA
PIQPAPRWTAQPHRPPSNIGTQTTRPSGAGCSTPGQPFLPHKCSSAVHNAHGVQEPAVYV
PGQEPLTASRLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLES
PESLHAKIEEAVAVLQAHQAMEQPKAYMH
NT seq 1890 nt   +upstreamnt  +downstreamnt
atggctgccgccgctggccgcgggcccgagatgccgatcacctgcgcgcgcggctggcgg
ccgcaggtgcggcgggggcggcgccctcgattgcgcgggcctggggcggtaaaggcgcgg
cgggcgggctgcggcagggacggacggggacagcccaccatgaacgccggcggccagggc
tacccactcgcctcgctctacgtgggcgacctgcaccccgacgtgaccgaggccatgctc
tacgagaccttctcgcctgccggccccatcctgtccatccgcgtgtgccgcgatgtggcc
acccggcgctctctgggctacgcctacatcaacttccagcagccggccgacgcggagcgg
gcactggacacgatgaactttgaggtgatcaaaggccaacccatccgaatcatgtggtcc
catcgggacccaggccttcgaaagtcgggcgtgggtaacatcttcatcaaaaacctggag
gactccattgacaacaaggctttgtatgataccttctccaccttcgggaacatcctctct
tgcaaggtggtgtgtaatgagcagggctcccggggcttcggcttcgtgcattttgagacc
cacgaggccgcgcagcaggccatcagcaccatgaatggaatgctgctcaatgatcgcaaa
gtctacgttggtcacttcaagtctcgccgggaacgggaggcggagctgggggctcgggcc
ctggagttcaccaacatctacgtgaagagcctccacgcggacatggacgagcagggcctg
caggacctcttctcccagtttggaaagacactgagcgtgaaggtgatgagggacagcagt
ggccgatccaggggctttggctttgtcaactttgagaagcatgaggaagctcagaaggct
gtggaccaaatgaatgggaaggaggtgagtgggcggctgctgtacgtgggccgggcccag
aagcgggcagagaggcagaatgagctgaagcgcaggttcgaacagatgaagcaggaccgg
cagaaccgctaccagggcgtgaacctgtatgtgaagaacctggatgactccatcaacgat
gagaagctgaggaaagtgttttctccctacggagtgattaccagtgcaaaggtgatgaca
gagggtagccacagcaaggggtttggctttgtgtgtttttcctctccagaagaagcgaca
aaggctgtgacagagatgaatgggcgcattgtgggcaccaagccactgtatgtggcgctg
gcccagcgcaaagaggagcggaaggccatcttgaccaaccagtacatgcagcgcctctcc
acggtgcaggccctggaccaccccctcctgggctccttccagcagcccaccagctacttt
ctgcctgctgtgcctcagcctccagcccaggctgcgtactatgactctggctccatagct
cctatccagcctgcccccaggtggacggcccagccgcacagacctccgtcaaacattggt
acccagactacaagacccagtggggcaggatgctctacaccaggccagcctttcctgcca
cacaaatgttcctcagctgtacacaatgcccatggggtccaggaacctgctgtgtacgtc
cctggccaggagcccctgactgcatccaggctggctgcagcacccctgcatgagcaaaaa
cagatgattggggagcgcctctaccccctcatccatgatgtccatacccagctggctggc
aagatcacaggcatgctgctggagatcgacaactcggaactgctgctcatgcttgagtct
ccagagtccctccatgccaagatagaagaggcagtagcagtcttgcaggcacaccaggcc
atggagcagccgaaggcatatatgcactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (47)   
   KEGG ORTHOLOGY (1)   
   RefGene (43)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (7)   
   UniProt (1)   
   RefSeq(pep) (6)   
DNA sequence (8)   
   RefSeq(nuc) (8)   
Protein domain (7)   
   Pfam (7)   
All databases (75)   

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