KEGG   Cyprinus carpio (common carp): 109046511
Entry
109046511         CDS       T05134                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03018  RNA degradation
ccar03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109046511
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109046511
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccar03019]
    109046511
   03041 Spliceosome [BR:ccar03041]
    109046511
Messenger RNA biogenesis [BR:ccar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109046511
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     109046511
Spliceosome [BR:ccar03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    109046511
SSDB
Motif
Pfam: LSM InhA-like_MAM
Other DBs
NCBI-GeneID: 109046511
NCBI-ProteinID: XP_018919801
UniProt: A0A8C1QZN5 A0A9Q9UXF8
Position
43:complement(3950776..3952230)
AA seq 103 aa
MADKDKKKKESIFDLSKYIDKHIRVKFQGGREASGVLKGFDPLLNLVLDGTTEYMRDPDD
QYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG
NT seq 312 nt   +upstreamnt  +downstreamnt
atggcggacaaagacaagaaaaagaaggagagtatttttgatttgtcgaaatacatcgac
aaacatataagagtaaagttccaaggaggtcgtgaagcaagtggagttttaaaaggcttc
gacccgctgttgaatcttgtgttggatggcaccactgaatacatgcgagatcctgacgat
cagtataagctgaccgaagacaccaggcagctcggtctggttgtgtgtcgagggacgtca
gtcgtgctgatctgtccacaggacgggatggaagccattcccaaccctttcattcaacag
caggatggataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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