KEGG   Cyprinus carpio (common carp): 109054984
Entry
109054984         CDS       T05134                                 
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
  KO
K12835  ATP-dependent RNA helicase DDX42 [EC:3.6.4.13]
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109054984 (ddx42)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccar03041]
    109054984 (ddx42)
Spliceosome [BR:ccar03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    109054984 (ddx42)
 Complex B
    109054984 (ddx42)
 Complex C
   U2 SnRNP specific factors
    109054984 (ddx42)
SSDB
Motif
Pfam: DEAD ResIII
Other DBs
NCBI-GeneID: 109054984
NCBI-ProteinID: XP_018927758
Position
6:10670008..10678168
AA seq 745 aa
MNWNKGGPSGKRGFGFGGFSLASGKKEEPSLPQKAHSSFGASGPSGGYGKNQQLSSFYKI
GTKRANFDEENAYFEDDEEESSSTDLPYIPAENSPTRKQFQSGGGGGGSDSEDDPLDAFM
AEVEDQAAKDMKKLEEKEKEKKLAKGIRDDIEEEDDQEAYFRYMAENPTAGLTQEEDEEE
VDYDSDGNPIAPTTKKIIMPLPPIDHSEIDYPPFEKNFFIEHEELSSLTEAGVVELRKKL
NLKVSGAAPPKPATSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALGGRDMIGIAKT
GSGKTAAFIWPMLVHIMDQKELEQGEGPIAVIVCPTRELCQQIHSECKRFGKVYGLRSVA
VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEY
QVRSIASHVRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDVTQIVEVLQ
TYINPWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSESTERSSGGGSALGNYEAYKPST
GAMGDRMSALKQAFQAQYKNHFVAASGVPPKLTTKSSSSSGWTSAGSLSSLPSGAPEGPD
GTHLSYLPSSSSSFSSMPPPPPALSSGTKMSGFSSAGSLSSVSDSYSSSSSKEGSRSDRN
ADDRGHRGDSHYHHSDRHSAGDRDRYAERDRHSDRDRHSDSRNGEGSHRDREGRSERDGG
ERSGTHKDSFAVPDPPKRKKSRWDN
NT seq 2238 nt   +upstreamnt  +downstreamnt
atgaactggaacaagggaggtccgagtggcaagcgaggctttggattcgggggattctct
cttgcgagcgggaagaaagaggaacctagtcttccccagaaggcccactcttcatttgga
gcttcaggtccatcaggtggatacggcaagaatcagcagctttcttctttttacaaaata
ggaacaaaacgagccaatttcgacgaggagaatgcttattttgaggatgatgaagaggag
tctagcagtacagatctgccgtatatacccgccgagaactctcccactagaaagcagttc
cagtctggaggaggaggaggcggctccgacagcgaggatgaccctcttgatgcttttatg
gctgaggtggaggaccaagcagcaaaagacatgaagaaactcgaagaaaaggaaaaagag
aaaaagttagccaagggtatacgggatgacatcgaagaggaggatgaccaagaagcatat
tttcgttacatggcggaaaacccaacagctgggctgacccaagaggaagatgaggaagaa
gtggactatgacagcgatggaaaccccattgctcctactaccaaaaagattatcatgcca
ctgcccccaatagaccactcagagattgactatcctccctttgagaagaacttctttatt
gagcatgaggaactcagcagtctgactgaggccggagtggtggaactgagaaagaagctc
aatctgaaggtttcaggtgcagcacctcctaaaccagccactagttttgcccacttcgga
tttgatgagcagctcatgcaccagatccgtaaatctgagtacactcaacccacacccatc
cagtgccagggtgttccgatagctttgggaggcagagacatgattggcattgccaaaact
ggcagtggaaagactgcagctttcatttggccaatgctggtgcacatcatggaccagaag
gagctggagcagggagagggacccattgctgtgatcgtctgccccaccagagagctctgt
caacagatccattctgaatgcaagcgctttgggaaggtgtatggcctccgctcggtggca
gtatatggaggcggcagcatgtgggaacaagccaaagctctacaggaaggagccgaaatt
gttgtctgcaccccaggtcgcctgatcgatcatgtgaagaagaaggctacatctctgcag
cgagtgacctacctggtgtttgatgaagctgatcgcatgtttgatatgggatttgaatac
caagtgagatccattgccagccatgtcagacctgatcgacagactttattattcagtgca
acatttcggaagaaaattgaaaagctggcgagagatattttggtcgaccccattcgtgtc
gttcagggagacataggagaggctaatgaagatgtcactcagatagtggaggtgctgcag
acttatataaatccctggttcaggaagtcccgcttcaagggagggaaagggaagaagcta
aatattggaggtggaggcctgggttacagagagagaccaggccttggatctgaatccact
gagcgcagtagtggtggtggttctgctcttggtaactatgaagcctacaaaccctccact
ggggccatgggagaccgtatgtctgctctgaagcaagcatttcaggctcagtataaaaac
cactttgtggcagcgtctggtgttcctccaaaactcaccacaaagtccagcagctcctct
ggatggaccagtgcgggaagtctaagttctttgccttcaggagcaccagaggggcctgac
ggaacccacctgtcctacttgccatcgtcttcttcctcgttttcctccatgccgccgccg
ccccctgccctcagctcgggtaccaaaatgagcggcttcagcagtgcaggctccttgagc
tcagtttcagactcttactctagctcttcttcaaaagagggatcccgtagcgataggaat
gctgacgacaggggtcatcgtggagatagtcattatcatcacagtgacaggcatagtgcc
ggagaccgtgatcgctatgcagaaagagaccggcatagtgacagagatcgtcacagcgat
agccgaaatggtgaagggagccatagggacagagagggacggtcagaaagagatggcggc
gagaggtcagggactcataaagacagctttgcagttcctgatccccccaaacgtaagaaa
agcagatgggacaattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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