KEGG   Cyprinus carpio (common carp): 109068240
Entry
109068240         CDS       T05134                                 
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 2-like
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03008  Ribosome biogenesis in eukaryotes
ccar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    109068240
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109068240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccar03021]
    109068240
   03019 Messenger RNA biogenesis [BR:ccar03019]
    109068240
   03009 Ribosome biogenesis [BR:ccar03009]
    109068240
   03016 Transfer RNA biogenesis [BR:ccar03016]
    109068240
Transcription machinery [BR:ccar03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     109068240
Messenger RNA biogenesis [BR:ccar03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     109068240
Ribosome biogenesis [BR:ccar03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    109068240
Transfer RNA biogenesis [BR:ccar03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    109068240
SSDB
Motif
Pfam: XRN_M XRN_N
Other DBs
NCBI-GeneID: 109068240
NCBI-ProteinID: XP_018940638
Position
Unknown
AA seq 945 aa
MGVPAFFRWLSRKYPSIIVHCLEEKAKEYNGFKIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELTEEKNKMREEVIQRGGYLPPDEIKERFDSNCITPGTEFMDNLAKCLRYYVAD
RLTNDPGWHNITVFLSDASVPGEGEHKIMDFIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCSQMGHEIKDCQGMAREKQGEHDEFADTVPVSEQE
FIFIRLAVLREYLERELTMASLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHKTGGYLTENGFVNLERVELIMQAVGVAEDNIFKKRKDDDESFKRRMKE
KKKRMKAEQGPSFVPGGQFAPQALGGRDRPMAVQNARQAAYEMRMKGNQRNQEAAQSLRA
MMKNGKSPAGGSEDMDSRGVKRKAEDSDSEPEPEDNVRLWEEGWKQRYYKTKFDVDATDD
EFRKKVVQSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKGMFNNFEKGTKPF
KPLEQLMGVFPAASGNFLPQTWRALMTDPESSIIDFYPDDFAIDLNGKKYAWQGVALLPF
VDERRLRAALADVYPDLSPEEVRRNSLGSDVLFVGKSHPLCDFIRELYRAESHEDTEIPA
ELCHGIQGILNLDEDPILPDKPVESPIPTLRDISSNCAIGIKFKDPQYDDGFVFKAVVLP
GAKIPNKVLKPGDWEQSNRGPWRPQLGFNPNRQQAHLDQSGFRKLNHYVDRNQGAGQYGS
GPPFEAQHRGGQYSNAPPPRNYQQGNYRPPQRDHYPQNQYPRTPPVNAIAANPRFQHGAH
GWDRAMQSQSTAYQQNQERGRGGVDDPPHNQPGQPQEEDXSRICL
NT seq 2838 nt   +upstreamnt  +downstreamnt
atgggagtccccgcgtttttccgctggttgagtcggaagtatccgtcaataatagtacac
tgtctggaggagaaggccaaggagtacaatggctttaaaatcccggttgataccagcaaa
cccaatccaaatgaagtggagtttgacaacctgtatctagacatgaatggaattattcac
ccgtgcacacatccagaggacaagccagcacctaaaaatgaagatgaaatgatggttgcc
attttcgaatatattgaccgtctctttaacattgttcgaccgagacgggttctgtacatg
gcaattgatggtgtggctcctcgtgccaaaatgaaccagcagcgctcgagacgattccgg
gcatctaaagaaggagtggagcttacagaggagaaaaacaaaatgagagaagaagttatt
cagagaggtggttacctgccacctgacgaaataaaagaacgttttgacagtaactgtatc
acccctgggacagagttcatggataatttggccaaatgtttgcgatattacgtcgcagac
agactgaccaatgaccctgggtggcataatatcacagttttcttgtcagatgctagtgtt
cccggagaaggagagcataaaattatggatttcatcaggagacagagagctcagccaaat
catgacccaaacacacatcactgtctctgtggagctgatgctgatttgatcatgttgggt
ttggcaacacatgaacccaacttcaccattataagagaagagttcaaacccaacaaaccc
agaccctgcgccctgtgtagtcagatgggccacgagatcaaagactgtcagggaatggcc
cgagaaaaacagggcgagcatgatgaatttgcagacacagttccagtatcagaacaggag
ttcatattcatccgactggctgtgttacgagagtatctagagagggagttaacaatggcc
agcctgccgttcccatttgactttgagcggagtgtcgacgactgggtgttcatgtgtttc
tttgtgggaaacgacttcttgccccacttaccgtctcttgagatcagagagggcgccatc
gatcgtctggttggcatctacaaagatgttgtgcataagaccgggggctacttaacagaa
aatggctttgtcaatctcgagcgcgtcgagctcataatgcaagctgtaggggtggcagag
gacaacatcttcaaaaagcgcaaagacgatgacgagagttttaaacggagaatgaaggaa
aagaagaaacggatgaaagcagagcagggtccatcgtttgtccctggtggtcagtttgcc
cctcaggctctgggtggcagagacagacccatggcagtgcagaacgccagacaagctgca
tatgaaatgaggatgaagggaaatcagcgcaatcaggaagcagctcagtccttgagagcc
atgatgaaaaacggaaagagtcctgctggaggcagtgaggacatggacagtcgtggtgtg
aaacgtaaagctgaggacagtgacagtgaaccggaaccagaagataacgtcaggttatgg
gaggagggctggaaacagcgttactacaaaaccaaatttgatgtggacgcgacggacgat
gagtttcgtaagaaagtggtgcagtcgtacgtggagggcctgtgctgggtgctcaggtac
tactatcagggctgcgcgtcctggaagtggtattttccctttcattatgctccgtttgcc
tccgacttcaaagacatcaagggcatgttcaacaatttcgagaaagggaccaaaccgttc
aaacctctggagcagctcatgggtgtatttcctgctgccagtggaaacttcctgccacaa
acatggagggccctgatgacagacccagaatcctcaatcattgatttctaccctgatgac
tttgccattgatttgaatgggaagaagtacgcctggcagggtgttgctttgttgccgttt
gtcgacgagcggaggctgcgagcagcattagcagacgtctaccctgatttgtccccagag
gaggtaaggaggaacagtctcggaagtgatgtcctgtttgtggggaagtcccaccccctt
tgtgatttcatccgggaactctaccgtgcagaatctcatgaggacactgagatccctgca
gaactttgccatggaatccaaggtatattaaatctagatgaagaccctattctaccagat
aaaccagtggagtcgccaatcccaacgctgagagacatcagcagcaactgtgctattgga
atcaaattcaaggatccgcaatatgatgatggttttgtgttcaaggctgttgtcctacca
ggggcaaagattcccaacaaggttctaaaaccgggtgattgggagcagagtaaccgcggc
ccatggagacctcaactgggattcaacccaaaccgccaacaagcccatttggaccaatcg
ggtttcagaaagctcaatcactatgtggacagaaatcaaggggcgggtcagtatggctct
ggcccgccttttgaggctcagcataggggcggacagtacagcaatgccccaccccccaga
aactatcagcaaggaaactaccgtccaccccaaagagaccattaccctcaaaaccaatat
cccagaacacctccagtgaacgccatcgcagcgaatcccagattccagcatggagctcac
ggttgggatcgggccatgcagtcccagagcaccgcttaccagcagaaccaggagcgagga
cgaggaggggtggacgacccccctcacaaccagccaggacagccgcaggaggaggacntc
agcagaatatgcctgtaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (18)   

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