KEGG   Cyprinus carpio (common carp): 109105020
Entry
109105020         CDS       T05134                                 
Symbol
lsm6
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03018  RNA degradation
ccar03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109105020 (lsm6)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109105020 (lsm6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccar03019]
    109105020 (lsm6)
   03041 Spliceosome [BR:ccar03041]
    109105020 (lsm6)
Messenger RNA biogenesis [BR:ccar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109105020 (lsm6)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     109105020 (lsm6)
Spliceosome [BR:ccar03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    109105020 (lsm6)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 109105020
NCBI-ProteinID: XP_018973912
UniProt: A0A8C2HS78
Position
31:complement(18161823..18201145)
AA seq 80 aa
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAVEQTEEYVNGQLKNKY
GDAFLRGNNVLYISTQKRKM
NT seq 243 nt   +upstreamnt  +downstreamnt
atgagtctccggaagcagacaccaagtgatttcctgaagcagatcattgggagaccagtg
gtggtgaagctgaactctggtgtggattacagaggagtcctggcttgccttgacggctac
atgaatatcgccgtggaacagacagaggaatatgtcaatggccagctgaagaacaagtat
ggagacgcatttctcagaggaaacaatgtgttatacatcagcacccagaagaggaagatg
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (17)   

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