KEGG   Cyprinus carpio (common carp): 109112174
Entry
109112174         CDS       T05134                                 
Name
(RefSeq) helicase SKI2W-like
  KO
K12599  antiviral helicase SKI2 [EC:5.6.2.6]
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109112174
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccar03019]
    109112174
Enzymes [BR:ccar01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     109112174
Messenger RNA biogenesis [BR:ccar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     109112174
  mRNA degradation factors
   3'-5' decay
    Ski complex
     109112174
SSDB
Motif
Pfam: Ski2_N MTR4_beta-barrel DSHCT Helicase_C MTR4-like_stalk DEAD DUF3516
Other DBs
NCBI-GeneID: 109112174
NCBI-ProteinID: XP_018980714
Position
38:6683370..6701906
AA seq 1083 aa
MDKTGLPPVGPDDLPLSLLEMGCSGRFELITHPLPKNRPLPPHSTLPHGLPPTCLDLKTE
VEKRFLRDPAWLPVHDVDDAFHKFLKISARDREVESLLHCSLSPLHSGLSVVRDPTTGLL
LDFTEVLLEDTGLSAKNSLSLQRQPGPPSESLRGSNTNYPFLPAGMEELTLEQITKKSEL
EEEIDFEKDLLTVPPGLKAGMDFTDKEAKTTKSELNLLSLLSTFDDAIDALPEEKEGVSQ
KEETVKLPRTNSLEDLGIKDSGSSPSQPSANTVSLTEQKKKAQQEDKGDNKKWAVPVDIT
SACDDFYKRIPDPAFKYPFELDVFQKQAILRLEAHDSVFVAAHTSAGKTVVAEYAIALSQ
KHMTRSLLFNTLPFKRLGSVPNSVEFSEWIGRIKKRPIYVISTIKRPVPLEHYLYTGNST
KTQKELFLLLDASGNFLTKGYYAAVEAKKERTSKHAQSFGTKNVSQHNTTASQDRAVWQT
LLNYLSQRQQTPVVAFTFSRTRCDENARSLTSLDLTSSIEKSEIHSFLQKSLTRLRGGDR
QLPQILSMRDLLKRGIGVHHSGILPILKEIIEMLFSRGLVKVLFATETFAMGVNMPARTV
VFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGTVIILCKAGVHDMGDLHAMMLGK
PTVLQSQFRLTYSMILNLLRVEALRVTDMMRRSFSENHRDTQAHEKRISELRNTLSSLPP
LDTEGQLSDLLSYYHTITELRITTETLQVHAHTHTFIESCTAYLNLLYLYSSLSLPSHLL
PQVSNDAVNRTFTALIICEKGNEEAAGDDQSNKAFHPIYSTSLFIPEGPCSHTVQKLKLQ
DISAITTKTLKVIPERIIDNYNKRQQPRFRLDPPGQAISTATQELLRLAEANPNGITTLD
PVNDLHLKAVDVVEGVMRHRVLQDCLKDFHCIHSPTFTEQFARVQERMCVQEELDKLLFL
VSDQSLTLLPEYHQRIKVLEALQYVDSTGAVQLKGRVACQISSHELLLTELLFENTLSPL
APEESAALLSCLIFTQNTQIDPHITSTLQEVKQSSPHVLTTTFPQPRKTWKYLELRFPAS
NTC
NT seq 3252 nt   +upstreamnt  +downstreamnt
atggacaaaacaggcttgcccccggtgggtcctgatgacttgcccctgtctctgctggag
atgggctgctcggggagatttgagctcatcacacaccccctgcccaaaaacagacccctg
cctccacacagcacgcttccccatggcctccctcctacttgtctggatctgaaaacagag
gtagagaagcgttttctgcgagaccctgcttggctcccggtgcacgatgtggatgatgcc
ttccacaagttccttaagataagtgcgcgagacagagaggtggagtctctcctgcactgc
tcactgtctccactgcactccggtctgtctgtggtcagagaccccaccaccggcctgctg
ctggacttcaccgaggtgttattagaggacacgggactgtctgccaaaaattcgctctcg
ttacaaagacagcctggacctccgtcagagagtctgagagggagcaacacaaactatcca
ttcctgccagccggaatggaagaactgacgttagagcagattacgaaaaagtcagagctg
gaagaagaaatagactttgagaaagatttgttgacggttcctcctgggctgaaggctggc
atggacttcactgacaaagaagccaaaaccacgaagagtgagctgaacctgttgtcccta
ctgtcgacctttgatgatgccatcgacgctctgccagaggagaaagagggagtctcccaa
aaagaggagaccgttaaacttccccgaacgaacagcctggaggacctgggaattaaagat
tcaggcagctctccttctcagccttcagcgaacacagtaagtctgactgaacaaaagaag
aaagcgcagcaagaagacaagggggacaataaaaaatgggccgttcctgtggacatcacc
tcagcctgtgacgacttctacaagcgtatccctgatccagccttcaagtatcccttcgaa
ctggacgtgtttcagaagcaggctattctccgactggaagctcatgactccgtctttgtt
gcggctcacacttcagccggcaagaccgtggtggctgaatacgcaattgcactttcccag
aaacacatgaccaggtctttactttttaatacactacctttcaaaagattgggatcagtg
cctaactcagtggagttcagtgaatggatcgggcgtatcaagaagcggcccatctatgtg
atcagcacaattaagaggcctgttcctctagagcactatctctacaccggcaacagcact
aagactcagaaagagctcttcctgttgctggacgcctctggaaacttcctcactaaaggc
tactatgccgcagtagaagccaagaaggaacgcactagtaaacatgcacagtctttcggc
acaaagaacgtgtcacagcacaacacaaccgccagtcaagaccgagccgtgtggcagacc
ctgctgaactatctgtctcagaggcagcagactccagtggtggcgttcaccttctctcgg
acacgctgtgatgaaaacgcccgctctttgacctctctggacctcaccagctccatagag
aagagcgagatccactctttcctgcagaagagcctgaccaggctgagaggaggcgatcgg
cagctaccgcagatcctgtcgatgcgcgatttgctgaagagagggattggtgttcaccac
agcggcatcctgccaatcctgaaggagattattgagatgctcttctccagaggtttagta
aaggtgctgtttgctactgagacgtttgctatgggtgtgaacatgcctgccagaactgtc
gtgttcgacagcatccgcaaacatgatggcacaggtttcagaaacctgctgcccggtgag
tacattcagatggcgggtcgtgctggcagaagaggtttggatgctacagggacagttatc
atcctctgtaaggcgggagttcatgatatgggagatctccacgccatgatgctggggaag
ccgacagtgctgcagtctcagttcagactgacctacagcatgatcctgaatctgctgcgt
gtggaggccctgagggtcaccgacatgatgaggaggagcttttctgagaaccacagggat
acgcaggctcatgagaagagaataagtgagctgagaaacacactctcctctctccctccg
ctggacacggaggggcagctatctgatttactgtcatattaccacaccatcacagagctg
cgcatcaccaccgagaccctgcaggtgcacgcacacacacacacatttatagaaagttgc
acagcttacctcaatctcctctatttgtattcctctctctctcttccctctcatctcctc
ccacaggtgtccaacgatgcagtaaatcgcacgttcaccgctctcattatctgtgagaag
ggtaatgaggaggcggcgggtgatgatcagtctaataaagccttccatcccatctacagc
acttcattgtttattccagagggaccctgcagtcatacggtgcagaaactgaagttgcag
gacatctctgccatcacaaccaaaaccctcaaagtcattcctgagagaatcattgacaac
tataataaaagacagcagccacgcttcagacttgatccaccaggtcaggctatttccaca
gcaactcaggagctcctgcgattggctgaggccaatccaaatggcattacgacgctggac
cctgtgaatgacctgcacctgaaggctgtggatgtggtggagggagtgatgaggcatcga
gtgttacaggactgtctgaaagacttccactgcatccactcgcccaccttcactgaacag
tttgcacgagtgcaggagaggatgtgtgtacaggaagagcttgacaagcttctgttcctg
gtgtcagatcagtcattgactctgctgcctgagtaccatcagagaatcaaggtgctggaa
gcgctgcagtatgtggacagcactggggcggttcagctgaagggccgtgtggcgtgtcag
atcagcagtcatgagctgctactgaccgaactcctgtttgagaacacactgagtcctctc
gcccctgaggagagcgccgccctgctgtcctgcctcatcttcacacaaaacacccagata
gacccgcacatcaccagcacgcttcaggaggtaaagcagagctcaccacatgttctcacc
accacattcccacagccaaggaaaacctggaaatacttagaattgcgattcccagcatcc
aatacttgttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system