KEGG   Ruminiclostridium cellulolyticum: Ccel_0313
Entry
Ccel_0313         CDS       T00835                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
cce  Ruminiclostridium cellulolyticum
Pathway
cce03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cce00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Ccel_0313
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cce03021]
    Ccel_0313
   03400 DNA repair and recombination proteins [BR:cce03400]
    Ccel_0313
Enzymes [BR:cce01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Ccel_0313
Transcription machinery [BR:cce03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Ccel_0313
DNA repair and recombination proteins [BR:cce03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Ccel_0313
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C RPOC_hybrid PIN_12 DUF3884
Other DBs
NCBI-ProteinID: ACL74700
UniProt: B8I5N3
Position
361501..365010
AA seq 1169 aa
MFELNNFDSIRIGLASPEKVREWSKGEVKKPETINYRTLKPERDGLFCERIFGPQKDWEC
HCGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRSLEKILYFASYVVIDPGQTPLSKKQVLTEKEYRDSVDKFGLNFRAAMGAEAVKELLV
EIDLESLSKELRTELTESTGQKRIRAVKRLEVVEAFRLSGNRPEWMILDVVPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKIFQCGLPKE
MALELFKPFVMKKLVNDGLAHNIKSAKRMVERVRNEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRALKLHPLVCSAYNADFDGDQMAVHVPLSAEAQSEARFLMLSANNLL
APKDGKPITVPTQDMVLGSYYLTIEKSDEPGDGRVFCDIDEVLMAYEEGALGLHAQIKVR
VEKEIDGVKKRKIISCTPGRLIFNEAIPQDLGFVDRSDESNLFDLEINFLVGKKELGKII
DKCIRVHGTTKTAVILDKIKALGFKYSTRGAITISVSDMVIPEIKKQYLQETENTIDNIV
KQYKRGLISDEERYNSVISAWTETGESITKALIDNLDRFNPVYMMSQSGARGNINQIKQL
AGMRGLMADTSGKTIEIPIKSNFREGLNVLEFFISTHGARKGLADTALRTADSGYLTRRL
VDVSQDVIVRELDCGTDKGIEVHDIKDGGETIEPLSERLVGRYLTDDLYDSETNELLASK
DEAMDEKKASLVTKSLAKSGIKKVKIRSVLTCHSEVGVCAKCYGANLATGDAVNIGEAVG
IIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARKPKGLAIISEIAGGVKL
SDSKKKREVIITSEDGESKSYQIPYGSRIKVYDGDVVEAGDELTEGSVNPHDILKIKGIK
GVQSYLLQEVQRVYRMQGVDINDKHIEVIVRQMMRKVKIEDAGDTSMLPGGLVDIFEFEK
ENQKAVEAGLAPATSERTLLGITKASLATDSFLSAASFQETTRVLTEAAIKGKIDPLVGL
KENVIIGKLIPAGTGMSRYKDISISSVVE
NT seq 3510 nt   +upstreamnt  +downstreamnt
atgtttgaactgaacaactttgattctataagaataggattagcttctccggaaaaggtc
agagaatggtcaaaaggtgaagtaaaaaagcctgaaactataaactacagaactttgaag
cctgaaagagatggtttgttctgcgaaagaattttcggccctcaaaaggactgggaatgt
cattgcggtaaatataaaagaataaggtacaagggtatcgtttgtgaccgttgtggtgtt
gaagtcacaaggtcaaaggtaagaagagaaagaatgggacatatcgagcttgctgctcca
gtatcacatatctggtattttaagggaataccaagcagaatgggtttaatccttgatatg
tctccaagatcccttgaaaagatactatattttgcatcatatgttgtaattgacccaggc
cagacaccattgtccaaaaagcaagtcttaactgaaaaggaatacagagacagtgttgac
aagtttggattaaatttcagagccgctatgggagccgaagctgtaaaggaattacttgtt
gagattgatctcgaaagcctttccaaggagttaaggactgaactgactgaatctacagga
caaaagagaatcagagcagttaagagactagaggttgttgaggctttcagactttcaggc
aatcgccctgaatggatgatccttgatgtagttccggtaattccgcctgaacttagacca
atggttcagttggacgggggaaggtttgcaacgtctgacttaaatgacctgtacagaagg
gttataaacagaaacaacagattgaaaagactccttgatttgggagctcctgacataatt
gtaagaaatgaaaagcgtatgcttcaggaagcagttgatgcattaatcgataatggtagg
agaggacgtcctgtaacaggacctggaaacagacctcttaaatcactttcagatatgctt
aaaggtaagcagggtcgtttccgtcagaaccttctgggtaagcgtgttgactactcagga
cgttcagttatcgttgtaggccctgacttgaagatattccagtgtggtctgccaaaagag
atggcgttggaattgtttaagccgtttgtaatgaagaagcttgttaatgatggcttggct
cacaatataaagagtgcaaagagaatggttgaaagagttagaaatgaggtatgggacgtt
cttgaagaagtaataaaagaacatcctgtgttactcaaccgtgctcctacacttcacaga
ctcggtatacaggcatttgaacctgtactggttgaaggaagagctttaaagcttcatccg
ttggtatgttcagcgtacaatgccgattttgatggtgaccagatggcggttcacgttcca
ttgtctgctgaagctcaatcagaagcaagattcctgatgttgtcagcaaataatctgctg
gcacctaaggacggtaaaccaataaccgttccaacacaggatatggtattgggaagctac
tacctaacaatagaaaagtcagatgagccaggtgacgggagagtattctgtgatatagac
gaagttcttatggcatacgaggaaggtgcacttggacttcacgctcagataaaggttaga
gtagaaaaagaaatagacggtgttaaaaagagaaagattatcagttgtacaccgggcaga
cttatatttaatgaagctattccacaggatcttggttttgtggacagaagtgacgaaagt
aatctttttgatttggaaataaacttccttgtgggtaagaaagagcttggaaaaattatt
gataaatgtatcagagtacacggtactacaaaaactgccgtaatacttgataaaataaaa
gcattgggctttaagtactccaccagaggtgctattacaatcagtgtatctgatatggta
atacctgagataaagaagcaatacctgcaggaaactgaaaatacaattgataatattgtt
aagcagtacaagagaggacttatttcagatgaggaaagatacaattctgttataagtgca
tggacagagacaggtgaaagtattacaaaagctcttattgacaacctggatagattcaat
cctgtgtacatgatgtcacagtcaggagcgagaggtaatatcaatcagatcaagcagctg
gctggtatgagaggtttgatggcggacacatcgggtaaaaccatcgagatacctattaaa
tcaaacttccgtgaaggtcttaacgttttggaattctttatttcgacccacggagccaga
aaaggtttggctgatactgcacttagaaccgctgactcaggttacctgacaagacgtctt
gttgatgtaagtcaggatgttatcgtaagagaacttgattgcggtactgacaagggtatt
gaggttcatgacatcaaggatggtggcgaaacaattgaaccattatctgagagacttgta
ggaagatatttgactgatgacttgtacgattcagagacaaatgagttactggcatcaaag
gacgaggccatggatgagaagaaagcttcactagtaactaaatcactagctaagtccggt
attaagaaagtaaaaatcagatctgtacttacctgtcattcagaggttggcgtatgtgcc
aagtgttatggtgcgaatctggcaactggtgatgctgtcaacattggtgaggctgtcggt
ataattgcagcacaatcaatcggagaaccgggtacacagctgacaatgagaacattccat
actggtggagttgctggtgatgatattacacagggtctccctcgtgtagaggaattgttt
gaagccagaaagcctaaggggcttgcaattatatctgaaatagcaggtggcgttaagctt
tcagactctaagaagaagagggaagtaattattacttccgaagacggtgaatcaaaatca
taccagataccttatgggtcaagaattaaggtatatgatggagatgttgttgaagccggt
gacgaattgaccgagggttccgtaaatcctcatgatatcctcaaaattaagggtatcaag
ggagttcagtcttaccttcttcaggaagttcagagagtttatagaatgcagggtgttgac
attaacgataagcatatagaagtaattgttagacagatgatgagaaaagttaagattgaa
gacgcaggagataccagtatgctgccgggaggactcgttgatatattcgagtttgagaaa
gaaaatcaaaaagctgttgaagcagggctggcacctgctacaagtgagcgtaccttactt
ggtataaccaaggcatcgctggctaccgactcattcctgtctgccgcatccttccaggaa
actacaagggttcttacagaagccgctattaagggtaagattgatcctctcgtaggtcta
aaggaaaatgtaattatcggtaagcttatacctgctggtaccggtatgagccgatacaag
gatattagtataagcagtgtagttgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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