KEGG   Campylobacter coli RM1875: YSQ_00145
Entry
YSQ_00145         CDS       T03164                                 
Name
(GenBank) recombination protein RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ccf  Campylobacter coli RM1875
Pathway
ccf03410  Base excision repair
ccf03430  Mismatch repair
ccf03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ccf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    YSQ_00145
   03430 Mismatch repair
    YSQ_00145
   03440 Homologous recombination
    YSQ_00145
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ccf03400]
    YSQ_00145
DNA repair and recombination proteins [BR:ccf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     YSQ_00145
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     YSQ_00145
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      YSQ_00145
SSDB
Motif
Pfam: DHH RecJ_OB DHHA1 Response_reg
Other DBs
NCBI-ProteinID: AHK72425
Position
33370..34941
AA seq 523 aa
MKTIDKNEIRKILASRFEKDLHTKLCDLPLPCCLKDIYKAANRIKEAIDKNEKIAIVGDY
DVDGIISCVIMAEFFDDIGFDYTVRIPNRFKDGYGLNAEIINELDVNLIITVDNGIAAFE
AAKLCKEKNIDLIITDHHMPQDTLPDAFAIINPKQKDCDFPDIEICGAQVAWYLIAALKE
VCKLKYDMGKFLELLAIAIVADMMELRDLNRALVRRGIECINKSKRVAFKAIKQYYQKDK
FALDNIGFLIAPLINSAGRMDDASISYEFLHTKDLDKASAYLEQIISFNESRKDEEKQLF
EDSLSQIDENDSCIVVSGLNWHEGVLGIVASRLAKHFNKPAFVFSQNDQRLKGSARSVGK
IDILALISKANFILSNYGGHKGAAGLSLDLDSFEKFKTIIKKECMEISQSEFLDTDEILG
ILDPNEIDFEMLEILESFEPFGHKNPRPFFILENLYVKNKKFLGKDEKHLKLILTKDNKT
IEALFFNFDKEPQLYENISLLGSISKNEFRRLATPQFIIKEIL
NT seq 1572 nt   +upstreamnt  +downstreamnt
atgaagacgattgataaaaatgaaattagaaaaattctagcttctcgtttcgaaaaagat
ttacataccaaactttgcgatttacctttgccttgctgcttaaaagatatttacaaggcg
gcaaatcgcattaaagaagctatagataaaaatgaaaagatcgctatagtgggtgattat
gatgttgatgggattatctcttgtgttattatggcagaattttttgatgatataggtttt
gattatacagtaagaattcccaaccgctttaaagatggatacggtttaaatgctgaaatt
atcaatgaacttgatgtaaatttgattattacagtggataatggtatagcagcctttgaa
gcagccaagctttgtaaagaaaaaaatattgatttaattataactgatcatcatatgcct
caagatactttacccgatgcctttgcgattatcaatcctaagcaaaaagattgtgatttt
ccagatattgaaatttgcggagcgcaagtggcttggtatttaatagctgctttaaaagag
gtttgtaaattaaaatacgatatgggtaaatttttagaacttctagctattgccattgtt
gcagatatgatggaattaagagatttaaatagagccttggttagacgagggattgagtgt
attaacaaatccaaaagagttgcttttaaggcgattaagcaatattatcaaaaagataaa
tttgcactcgataatataggatttttaatcgctcctcttatcaatagtgctggaagaatg
gatgatgcaagcatttcttatgaatttttacatacaaaggacttggataaagcttcggct
tatttagagcaaatcattagctttaatgaaagccgtaaagatgaggaaaaacagcttttt
gaagatagtttaagtcaaattgatgaaaatgattcttgtattgttgtatcgggtttaaat
tggcatgagggagttttagggatagtagcaagccgtttagcaaaacatttcaataaaccc
gcttttgtattttcacaaaacgatcagcgcttaaaaggaagtgcaagaagtgttggaaaa
atcgatattttagctttgatttctaaggcaaatttcatattgagtaattatggcgggcat
aagggtgctgcaggtcttagtttagatcttgattcttttgaaaaatttaaaaccataata
aaaaaagaatgtatggaaatttctcaaagcgaatttttagacacagatgagattttaggt
attttagatcctaatgaaatcgattttgaaatgcttgaaattttagaatctttcgagcct
tttgggcataaaaatccgcgtcctttttttattttggaaaatctttatgttaaaaataaa
aaatttttaggaaaagatgaaaagcatctaaaactcatactcacaaaagataataaaacc
atagaagctttattttttaattttgacaaagaaccccaattgtatgaaaatattagtttg
cttggaagtatttctaagaatgaatttagaagattggcaactccacaatttattattaaa
gaaattttgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

Download RDF
DBGET integrated database retrieval system