KEGG   Capnocytophaga canimorsus: Ccan_20500
Entry
Ccan_20500        CDS       T01582                                 
Name
(GenBank) Polynucleotide phosphorylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
ccm  Capnocytophaga canimorsus
Pathway
ccm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Ccan_20500
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccm03019]
    Ccan_20500
   03016 Transfer RNA biogenesis [BR:ccm03016]
    Ccan_20500
Enzymes [BR:ccm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     Ccan_20500
Messenger RNA biogenesis [BR:ccm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Ccan_20500
Transfer RNA biogenesis [BR:ccm03016]
 Prokaryotic type
  tRNA degradation factors
   Ccan_20500
SSDB
Motif
Pfam: RNase_PH RNase_PH_C KH_1 PNPase S1 KH_2 KhpA-B_KH PCB_OB
Other DBs
NCBI-ProteinID: AEK24166
UniProt: F9YU48
Position
complement(2204019..2206208)
AA seq 729 aa
MIPEVKKEIIDLGDGRTISIETGKLAKQADGSVVVRMGNTMLLATVVSAREINPETDFLP
LTVDYREKFAAAGRFPGGFFKREARPSDQEVLTMRLVDRVLRPLFPKDYHAETQVMIQLM
SHDDNVMPDALAGLAASACIAVSDIPFDGPISEVRVARIDGKFIINPNREQLAQSDMDIM
VGASKDFVAMVEGEMDEVSEKDMAEAIKFAHEAIKLQIDAQIRLAEKVGKTEKRTYEPEI
ENEEVEQKVYGLAYPKCYAIAKENTSKQERGEKFAAVKEECLALFSEEEQEEFATLISKY
FGKAQKEAVRNLILDENIRLDGRNTTQIRPIWCEIDYLPSAHGSSIFTRGETQSLTTVTL
GTSREANVIDLPTEQGEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIP
ADCPYTVRVVSEILESNGSSSMATVCAGTLALMDAGVQMTKPVSGIAMGLITDGEKYAVL
SDILGDEDHLGDMDFKVTGTKDGITACQMDIKIKGLTYEILEKALEQAREGRLHILGKIT
DTIAEPKAEVKPHAPKIVTMEIPKDYIGAVIGSGGKNIQGIQQETGTTIVIEEEGDLGII
EVLGTDPEGMERAINAIKACIFEPVEGETYSVKVTKLLDFGAVVEFVPGKDSLLHISEMA
WERTEKPSDLVKEGDIIEVKYIGIDPKTRKQKVSRKALLPRPPREDKPKNDRPRNENKQR
HQKSDNKEK
NT seq 2190 nt   +upstreamnt  +downstreamnt
atgattccagaagttaaaaaagaaattattgatttaggcgacggaagaaccatttccatt
gaaactggaaaattagcaaaacaggcagatggttcagttgttgtacgtatgggaaataca
atgttgttggcaacagtggtttctgcaagagaaattaatcctgaaactgattttttacca
ctaacggtagattatcgtgaaaaatttgctgctgcagggcgtttcccaggcgggtttttc
aaacgtgaggcacgtcccagcgaccaagaagtgctaacaatgcgtttggtcgatagggtg
ttgcgtccgttattcccgaaagattatcacgctgaaactcaagtgatgattcagctaatg
tcgcacgatgataatgtaatgcctgatgctttggcaggattggcggcttcggcttgtatc
gctgtgtcggatattccttttgacggacccatttcagaggttcgtgtagcacgaattgat
ggtaaatttatcataaatcctaacagagagcaacttgcacaatctgatatggatattatg
gtaggtgcttccaaagatttcgtggcaatggtggaaggagaaatggatgaggtttctgaa
aaagatatggcggaggctatcaaatttgctcacgaagccatcaaacttcaaattgatgct
caaatccgtttggcggaaaaagtaggtaaaactgaaaaacgtacttatgagccagagatt
gaaaatgaagaagttgagcaaaaagtgtatggtttggcatatccaaaatgttatgctata
gccaaagaaaatacttcaaaacaagagcgtggtgaaaaatttgctgctgtaaaagaggag
tgtttggcgttattctctgaagaagagcaagaagagtttgcaaccctcatcagtaaatat
tttggaaaagctcaaaaagaggcggttagaaatcttattttagatgaaaatatccgtttg
gacggacggaatacgactcaaattcgtcctatttggtgcgagatagattatttaccatca
gctcacggttcttctatctttacacgtggtgaaactcagtcacttacaacagtaacttta
ggaacttctcgtgaggcaaacgtaattgacttgccaacagaacagggagaagaacgtttc
tacttacattataatttccctccattctcaacaggtgaagctcgtccgcttagaggaact
tcccgaagagaaatcggtcacggaaacttggcacaacgtgccttaaaacgaatgattcct
gcggattgcccttacacggttcgtgtagtttctgaaattttagagtcgaatggctcttct
tcaatggctacggtatgtgctggaactctcgcacttatggatgctggtgtacaaatgact
aaacctgtatcaggaattgcaatgggcttgattaccgatggcgaaaaatatgcagtgctt
tccgatattttgggagacgaagaccatttgggagatatggatttcaaagtaactggaacc
aaagatggtataacggcttgtcagatggacatcaaaatcaaaggattaacgtatgaaatt
ctggaaaaagccttagaacaagctcgtgaaggacgtctgcatattttaggcaaaattact
gatactattgctgagccaaaagcagaagtgaaacctcacgcaccgaaaatcgtcactatg
gaaattccgaaagattacattggtgcagttattggttctggtggtaaaaatattcaagga
attcaacaagagacgggtacaactattgttattgaagaagaaggcgatttgggtatcatt
gaggttctgggaactgacccagaaggaatggaaagagctatcaatgctatcaaagcgtgt
atttttgagcctgttgaaggagaaacgtatagcgtaaaagttacgaaactattggatttc
ggtgctgtggttgagtttgttcctggtaaagattctttattacacatttctgaaatggct
tgggaacgcaccgaaaaaccatcagatttggtgaaagaaggggatattatcgaagtcaaa
tacattggtattgaccctaaaacgcgtaagcagaaagtgtctcgcaaagcattgttacca
cgtcctccaagagaggataagcctaagaatgatagaccaagaaacgagaataaacaaaga
caccaaaaatcagataacaaagaaaaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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