KEGG   Chondrus crispus (carragheen): CHC_T00002345001
Entry
CHC_T00002345001  CDS       T02916                                 
Name
(RefSeq) hypothetical protein
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03022  Basal transcription factors
ccp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    CHC_T00002345001
  09124 Replication and repair
   03420 Nucleotide excision repair
    CHC_T00002345001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccp03021]
    CHC_T00002345001
   03400 DNA repair and recombination proteins [BR:ccp03400]
    CHC_T00002345001
Transcription machinery [BR:ccp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     CHC_T00002345001
DNA repair and recombination proteins [BR:ccp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     CHC_T00002345001
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 17321063
NCBI-ProteinID: XP_005713351
UniProt: R7Q6W0
AA seq 343 aa
MRAPRGDFRVRAADDPPSLLVVILDVAALAWTDIAGDKATATLQSVIEQLLVFLNSFMLL
HESNRICVILASPDGAQLVFPELSEPGSRCSDIDLVAEDNALDAATAGSGFTLHAEQTPL
KLRDAVLAGVKEAFRAQEGEVASAPAPISTALATALCLHNRAKSIKSTRSSLSLGQGNGQ
ANNDSGTCNGRILMLIASEDAPEQYVPVMNCIFSAQRMGVPLDSCIHGDKDSTYLQQAAY
LTNGVCLRPNEFSTENPNVLIQILQTVFLTDRLNRDFLAMPTPRKVDFRASCMKTRQIIE
DGYTCSVCLSTFATTVAKGAAMCPICSARFAITSRVKRRPPRP
NT seq 1032 nt   +upstreamnt  +downstreamnt
atgcgtgcaccacggggtgacttccgcgttcgtgcggcagatgatcctccgagtttattg
gttgttatactcgatgttgcagcacttgcgtggacggatattgcgggcgataaagccacg
gcaactcttcaatctgtgattgaacagctacttgtctttttgaattcattcatgctcctt
cacgaatcgaatcgcatttgcgtaatcctggcttcaccagatggggcccagctagtcttc
ccagagctttcagaacccggctcgcgatgctctgatatcgatttagtcgctgaggacaat
gcactggatgctgctactgctggaagtggcttcactttacacgcagaacaaacaccattg
aaattgcgagacgccgtactcgcaggtgtcaaagaggcgtttcgagcgcaggaaggggag
gtcgcaagtgctccagctccgattagcactgctctcgccacggccttgtgtttgcataac
cgtgcaaaaagcattaaatcgacacgctcctcattgagtctaggccagggcaacggccag
gcaaacaatgattccggaacatgtaatgggcgaatccttatgcttatcgcaagtgaagac
gccccagagcagtacgtgccggtcatgaattgcatattctccgcccagcgcatgggcgtc
cccttggattcatgtatacatggggataaagactcaacataccttcaacaggccgcgtac
ctgacgaacggtgtttgtctcaggcccaacgagtttagcaccgaaaacccaaatgtacta
attcagatcttgcagacggtctttctgactgatcgtctcaaccgcgattttctggcaatg
ccaactccgcgcaaggtcgatttccgtgcttcttgtatgaagacaaggcaaatcattgaa
gatggctacacttgctctgtttgtttatcgacgtttgcaactacggtagcaaagggtgcg
gccatgtgccctatatgcagtgctcgcttcgccatcacgtctagagtgaagaggagacct
cccagaccctga

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