KEGG   Chondrus crispus (carragheen): CHC_T00003762001
Entry
CHC_T00003762001  CDS       T02916                                 
Name
(RefSeq) hypothetical protein
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03030  DNA replication
ccp03410  Base excision repair
ccp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CHC_T00003762001
   03410 Base excision repair
    CHC_T00003762001
   03420 Nucleotide excision repair
    CHC_T00003762001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccp03032]
    CHC_T00003762001
   03400 DNA repair and recombination proteins [BR:ccp03400]
    CHC_T00003762001
Enzymes [BR:ccp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CHC_T00003762001
DNA replication proteins [BR:ccp03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    CHC_T00003762001
DNA repair and recombination proteins [BR:ccp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      CHC_T00003762001
SSDB
Motif
Pfam: DUF1744 DNA_pol_B_exo1 DNA_pol_B RNase_H_2 DNA_pol_B_exo2
Other DBs
NCBI-GeneID: 17323190
NCBI-ProteinID: XP_005715474
UniProt: R7QE00
AA seq 2310 aa
MGVFRNRYGRSDYRSSIGGSRTGPTKLKTFADPALSDGLPHRSTWKDHRQQDELEDTLLG
FAPLPPGSRPRVGWLVNMVTGTLEEPLTRRPVQAVDLFFIADDGHDFRASIIARPYMYVA
VTKDLLREAEITIRKQFQDQVAEVSVVTLEDISMPNHLAADEGRSFLKVETRTTGDLYSL
RQGLAPIVDRNLERKRRTAAIHRATGGDATTPMGALDAIEDIREYDVAPVNRLAIDQKIN
VGYWYKVSPGGDQSSNARLEKLPDIVERAAPVVLAYDIECTKKPLKFPDAESGDEVMMIS
WMVDGKGFLGINREVVSKDIDNFEYKPHAEYHGEFEVFNEANEKALLERFFAETRIAAPR
VFVTFNGDYFDWPFVEKRAALLGLDMGKEIGMRTNGDDMMSKVTKGRAAIHMDVFHWVNR
DSYLPQGSRGLKAVTRALLGFEPEEIPPEEMMTAAIERPDEMAKYSVSDAVCTYYLYMKY
VHPFIFSLCNIIPLNPDDVLRKGSGTLCEMLLMCQAREKRIVAPNKYNGSAIGKLTDDGH
VLESETYIGGHVEAIRTGVYRSDLPLQFNIDVTALEDLEKTLDETLRFAIEVEGKMSVDD
VTNYAEVRAEIVKQLHRLRENPRLNEKPLIYHLDVSAMYPNIILTNRLQPHAMVTPAQCA
ACDFNGMSECQRDMEWTWRGEFYPASRGEAEMIQRRPESNRRGRKNAPDSAGLASFEDEE
SRKNVHFRKRLKEYCRTNYRKTQETRVVDKTATVCQRENPFYVDTVRAFRNRRYEYKALL
KKQKKLRSKAKEGGDPEEIKRTDNLVVLYDSLQLAHKCILNSFYGYVMRRGARWYSMEMA
GIVTNTGGLIIRRAREFIEKVGLPLELDTDGIWCVLPVSFPENFTFQTKSGKDYSISYIC
SVFNSDVAANFTNHQYQDLVNKDTFEYEQRSECSILFEVDGPYKAMVLPASLEEGKTIKK
RYAVFNDDGSLAELKGFEIKRRGELKLIKEFQGEIFSRFLEGRTLSECYEKVGETCNKWF
DVLATKGEGMTDAGILELLVEQNNMSKPLSDYIIAGQKSCAITCATRLKEFLGSAIVKDK
GLAATYVIARKPEETQVTGRAIPVKIFDFPNEVVKRKLLRKWTKNGDDENLKLRNLLDWE
YYKGRLANAILKIVTIPAALQAVDNPVPRVEYPAWLVKKCRELRDKRKQQSVMSFFKSMP
KGEKAIPGVRNSLLDNITHTEKLSMDDIEDMPLSSWTAAKIANRKARAVVETRDHLLQLF
HQPHPNKHDDYAGWLRYAKNIWRAQRAARVYRSGLKRQHNTCRGSSMGFLQKSVSLLGRG
VVWQNVSISPVHGKPGEYQLWVLPVKKDGNKYATGDLHSIPLHVKRVLYYNSRVETPPDI
PGVSAELVPGLALPRSREAHYLFRLELQEDRFQKTDKDLTSTLTDAGVLDGVFGAQAPLD
YETVLALGTFCVPKRSVVSRMQSKDLLRKGLTLNDIVSKGPDTAPYLKDSLKEDAKTVLN
QAFVYGSHALDGSSRALYAVIAPAAKLVHVVAVRPSANFSVNLKRIWKRVSEEKRDQSSD
GNDHPTPDKDAIQSTLPSDCTFTTRGVRTRKEAWSEIQQALSRIRNGSSMATRGGSSRLS
LGSLEVCVPLAKSYPVVTIASNADDGDYMPVGWESSAISLAFSRFTEISNWLPSHIHFSR
FAGIPLGNMSSTDVYSQALDVLVGRELLNRDHVLWASNSPQPDLGGFEEDDSNLQHEIPS
VPEVSSPGSYRTICIDTELSNLTIATILSSSHVNQLEGTDLAFDAAANGVAKVAKNSKNF
GGESGKEGTIGGRKAALLDEMAASAPAFRIIKDLVASWDKAASSETNPHVANISRGLLDH
LLRWTRSESSMLYDPALARFLGWLITKVFRQLVGELKDLGATVVFASMSRLILATPKTQT
VDGLRYAGFLEKTVKSKPLFRHVHFEPLIGVYSGLLFVDRFNYGALPAPEEASILSGEFG
QTVSKNAVTRRTCASREIPYARMMWDMARYLPIPVAVLWTQVVEEFIRRPMVVRLRAIEN
EAGSIEMVSDTPASDGLSEQQIRATDLQKKHFRPRGDGFADEVQDFTRNLTGQLLEKIHE
IREKTPTLVFPSVPSILNATDRHRNPALEFVRSLCYVLGLDPAASEEVAGMRRSLLRLLG
VREFAKEAQFKDPALPVPLRDVICTYCNAVVDLDVARDARLWTDPSQSQEGEETRHDSKS
LWACEYCGNRYDMRQIELDLMRSAQKMYTAYQVQDLKCMRCRMVKRDNMGTHCNCSGSPF
QLSVSHRDFRKQLHALESLIRLSLKQIEFK
NT seq 6933 nt   +upstreamnt  +downstreamnt
atgggcgtctttcggaatcgctacggccgctccgactatcgctcctccatcggcggctcg
cgtaccggccccaccaagctcaaaacctttgccgaccccgccctctcagacggcctgccc
caccgcagcacatggaaggatcaccgtcaacaagacgagctcgaagacacactgctcggc
tttgcgcccctgcccccgggctcccgtccgcgcgtcggatggctcgtcaacatggtcacg
ggcaccctcgaggagcccctaacacgcaggcctgtccaggccgtcgacctgtttttcatc
gccgacgacggccatgacttcagagcttccattattgcacgcccatatatgtatgtcgcc
gtcactaaggacctgctcagggaggcggaaattaccattagaaagcagtttcaggatcaa
gtcgctgaggtttctgttgtcaccctcgaggacatctctatgcctaaccacctcgctgcc
gatgagggaagatcatttttgaaggtcgagacccgcaccacgggcgatttgtacagcctc
cgccaggggcttgcccctatcgtcgaccgcaatctcgagcgcaagcgccgcactgccgcc
attcaccgcgccaccgggggagacgcaaccacccccatgggtgctctcgacgccatcgag
gatatccgcgagtacgacgtcgcacccgtcaacaggctcgccattgaccagaagatcaac
gtcggctactggtacaaagtctcgcccgggggcgaccagagctccaacgcccgattggag
aagttgcccgatattgtcgaacgggcagccccggtcgtcctcgcctatgacatcgagtgt
accaagaagccgctcaagtttccagatgcagagtctggcgatgaggtcatgatgatctcg
tggatggtcgacggcaaagggtttttgggcatcaaccgtgaggttgtgtccaaggatatc
gacaactttgagtacaaaccgcatgccgagtatcatggcgagttcgaggtcttcaatgag
gccaacgaaaaggctttgctcgagcgctttttcgcagagacccgcattgcggccccgcgc
gtgtttgtcactttcaatggcgactattttgactggccgttcgttgagaagagagcggca
ctgcttggtctggacatgggcaaggaaattggaatgcgcaccaacggtgatgatatgatg
tccaaggtgacaaaggggagggcagcgattcacatggatgtctttcactgggtgaatcgc
gactcctatctcccccagggctcccgcggtctcaaggctgtgacgagagccttgctcggc
tttgagccagaggagatcccgccagaagagatgatgacagctgctatagaaaggccggat
gaaatggcaaaatattccgtttctgacgctgtttgtacctactacttgtacatgaaatac
gtacaccccttcatcttctccctctgcaatattattccgctcaaccccgatgatgtgctc
cgaaaggggtctggaactctgtgcgagatgcttcttatgtgccaggctcgtgagaagcgc
attgttgcgccgaacaaatacaacggcagcgcaatcggcaagttaacggacgatgggcac
gtgctcgagtcagagacatacattggcggtcacgttgaagccatccgaacgggtgtgtat
cgaagtgacttgcctctccaattcaacattgatgtcaccgccctcgaagatcttgaaaaa
actcttgacgaaacgttgcggttcgccattgaggtcgagggcaagatgagtgtggacgac
gtcaccaactatgcagaagttcgtgcggagattgtcaaacagcttcatagacttcgtgaa
aacccccggctgaatgagaaaccccttatctatcatcttgatgtttcggcaatgtatcca
aacattatcctcactaaccgcttgcagccccatgcgatggtcactccagcgcaatgtgcc
gcctgcgatttcaacggaatgtcggaatgccagcgcgacatggagtggacgtggcggggt
gagttctatcctgcgtctcgaggagaagcggagatgattcagcggagaccagagtcaaat
cggagaggtaggaagaatgcccccgacagcgccggactcgcaagtttcgaagatgaagag
tcgcgcaagaacgttcattttcgaaagcgactcaaggaatactgccgcaccaactatcga
aaaacgcaagagactagagttgttgacaaaaccgcaactgtttgccaaagagaaaatccg
ttttatgtcgacactgttcgtgcatttcggaaccgaagatatgaatacaaagctcttctg
aagaagcagaagaagctccgcagcaaagcgaaggaaggtggcgatccggaggaaatcaaa
aggacggataatttggttgtgttgtacgactctcttcagctggcgcacaaatgcatcctg
aactcgttttatggctacgtgatgaggcgaggagcccgttggtattctatggaaatggcc
gggattgtgacaaacaccggcgggttaatcattcgacgagctcgagaattcatcgagaag
gttgggctgccccttgaattagatacagatggtatttggtgtgttttaccagtatctttt
ccagaaaacttcaccttccaaaccaagtctgggaaggattattccatcagctacatttgt
tctgtctttaactcggatgtcgcagcaaactttacaaaccaccaatatcaagaccttgtc
aacaaggacacgtttgagtatgaacagcgaagcgaatgttcgattctctttgaagttgat
ggtccgtacaaggccatggtgctcccggcctctctcgaagaagggaagactatcaagaag
agatatgcagttttcaatgatgacgggtcccttgcggagctgaaagggttcgaaatcaag
agaagaggagagctgaaactcatcaaagagttccagggcgaaatattcagcaggttcctt
gagggccgcacactatcagaatgttacgaaaaagtaggggaaacctgcaataagtggttt
gacgttttggcgacgaagggagaaggaatgactgatgctggaattcttgagctccttgtc
gagcaaaacaacatgagtaagcctttgagcgactatatcatagcagggcagaaaagttgt
gccattacttgcgcaacccgactgaaggaatttttgggctctgctattgtcaaggacaaa
gggctagctgccacttacgtgattgctcgaaagccggaagagacgcaggtaacgggcaga
gcgatccctgtgaaaatctttgacttcccaaatgaagttgtgaagcgaaaacttcttagg
aagtggaccaagaatggagatgatgaaaacttgaaacttcgcaacctcctagactgggag
tattacaaaggccgtctcgcaaatgcgattctcaagattgttactattccagctgctctt
caggccgtcgacaacccagtcccacgggtggaataccccgcttggctcgtgaagaagtgc
cgtgagctcagagacaagaggaagcagcagtctgttatgtcgttcttcaaatctatgccc
aagggcgagaaggccataccaggagtccgaaattcgctattggacaacatcactcacact
gagaagcttagcatggatgacatcgaagacatgccactcagctcttggacagctgcgaaa
attgcgaatcggaaagcgcgagccgttgtagagacaagagaccatctgctacaactcttt
catcaacctcatccgaacaaacacgatgattatgctggctggctgcgatatgcgaagaac
atttggcgggcgcagcgtgccgctcgcgtgtaccgcagcgggttgaagaggcaacacaac
acgtgtcgcggctcttcgatgggcttcttacaaaagtcagtttcgctgctaggcagggga
gttgtttggcaaaatgtgtcaatttccccagttcacggcaagcctggtgaataccagctt
tgggttttgccagttaagaaggacggtaacaagtatgcgactggagatctacacagcatc
cctctacatgtgaaacgagttctgtactataactccagagttgagacacctccagacatt
ccgggggtctcagctgagctggttcccggtcttgcacttccacggtcgcgcgaagcacac
tatctgttccggctagagctccaggaagaccgcttccagaaaaccgataaggatttgact
tctacccttaccgatgctggtgtgttagatggggtttttggtgctcaagcacctctcgat
tacgagactgtccttgctctcggaaccttctgtgtgccgaaacgctcagttgtctcgagg
atgcagtcaaaggacctgctgagaaagggtttgaccctgaacgatatcgtgtcaaagggt
cctgatacagctccctatttgaaagactctttgaaagaagacgcaaagactgtcttaaac
caggctttcgtatacggctcacatgcgctggatggaagctcgagagccctttatgctgtc
attgctcctgccgcgaagctagtgcatgtggttgctgtcaggccaagcgcaaacttctct
gtaaacctcaaacgaatctggaagcgcgtctcagaagaaaagagggatcagagcagcgac
gggaatgaccaccccacaccagataaagatgccatacagtcgacgctgccgtctgattgt
acgtttacaaccaggggggtgcgaacaaggaaggaagcctggtcggaaattcagcaagct
ctgtcgaggattcgcaacggatcttcgatggcgacgcgaggtggttcatctcgattgtcc
cttgggagtttagaggtctgtgttcctcttgccaagtcatatccggtcgtcactatcgct
agcaatgcagatgatggggactacatgccagttggatgggagtccagtgctatctcccta
gcctttagtcgtttcactgagatcagcaactggctcccgagtcacatccacttctctcgg
tttgctggaatccctcttggaaacatgtcatccactgatgtatactctcaggcgttggat
gttcttgttggcagagagctattgaaccgtgatcacgttctctgggcttcaaattcgccg
cagcccgatctgggtggcttcgaagaagatgatagcaaccttcaacacgaaataccgtct
gtgccggaggtctcttcaccagggtcatatcggacgatatgcatcgatacggaactttca
aatctcacaattgccaccattttgtcatcctcccacgtgaatcagttggaaggaactgat
ctggcctttgatgcggctgccaacggtgtcgctaaagttgcaaagaactccaagaacttt
ggcggtgagtctggaaaagaaggtactattggaggcaggaaggcagcccttcttgatgaa
atggctgcctcggcaccagctttccgcattataaaggatcttgtggcttcatgggacaaa
gcagcttcgagtgagactaatccacatgttgcaaacatttctaggggtctactggaccac
ctactgcgttggacaagatcagaatcgtcgatgctctacgatcctgccctcgctcgattc
ctgggatggctgatcacgaaagtttttcgacaacttgtgggagagctgaaagacttagga
gcaaccgttgtattcgcctctatgtcaagactcattctggctaccccaaaaacgcaaacg
gtggatgggttgcgatacgcaggtttcctggaaaagactgtcaagagtaagcctttgttt
cgacatgtgcactttgaaccactcattggggtttactctggacttttgtttgttgatcga
ttcaattatggtgcattaccagctccagaggaggcttcgattttgagtggagaattcgga
caaacagtttcaaaaaatgccgtcactcgcagaacttgtgccagtcgtgaaattccctat
gctcggatgatgtgggacatggcaagatacctacctattccagttgccgttttgtggaca
caggtggttgaagaatttatccgacgccctatggtagtccggctccgagcgattgagaac
gaagcgggttcaatagaaatggtgagtgacacacctgcttcagatggtttgtcagagcag
caaattcgcgcgacagatcttcagaagaagcacttccgtccaaggggagatggcttcgcg
gacgaagtgcaagacttcacgcgaaacctcaccggacaactgctggagaagattcatgaa
atcagagaaaagacgcccacactcgttttcccgtctgtcccctcaattctcaacgcgacc
gaccgacatcggaaccccgccttggagttcgtgcgttcattatgctacgtcctcggtctg
gatccggcggcttctgaagaggtcgccggcatgcgccgaagtttattacgcttgctgggt
gttcgcgaatttgctaaggaagctcaattcaaagatcctgcccttcctgtgcctcttcga
gatgtcatttgcacgtactgcaatgctgttgtggatctggacgttgctcgtgacgcaaga
ctttggacagacccaagccaatcacaagaaggggaggaaacacggcatgactcgaagtcg
ctttgggcatgcgagtactgtggcaatcgctacgacatgcggcaaattgagcttgacttg
atgcggagtgcacagaagatgtacacagcataccaagtgcaagacctcaagtgcatgcgt
tgtcgcatggtcaaacgagataacatgggtacgcactgcaactgcagtggatcgccgttc
caactatccgtgagccacagagatttccggaagcagttgcacgctcttgagagtttaatc
agactttctttaaagcagattgaattcaaatag

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