KEGG   Chondrus crispus (carragheen): CHC_T00006204001
Entry
CHC_T00006204001  CDS       T02916                                 
Name
(RefSeq) hypothetical protein
  KO
K06173  tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
Organism
ccp  Chondrus crispus (carragheen)
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ccp03016]
    CHC_T00006204001
Enzymes [BR:ccp01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.12  tRNA pseudouridine38-40 synthase
     CHC_T00006204001
Transfer RNA biogenesis [BR:ccp03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    CHC_T00006204001
 Prokaryotic type
    CHC_T00006204001
SSDB
Motif
Pfam: PseudoU_synth_1
Other DBs
NCBI-GeneID: 17326390
NCBI-ProteinID: XP_005718675
UniProt: R7QN10
AA seq 342 aa
MSAFVTPPLPSPSRGGRARPSAKRRQLIICGAVAPPEAAKPGRASSFPSNPDKQRIRARV
AYDGTLYRGWQYQTDQPTVQGALEDALRRKFGHTIRVVGASRTDTGVHARGQAMHFDIPI
ARALRDGESERKFHYTLNQMLPPDVRVPVLSVAPTVVPCKVTDECGNVGIATRPWHAIYN
AKGKLYTYRISTSPVFDPLGRLYRYHEWRATKFGFSEELLREASAKFVGSHDFSAFTNST
NPPPGFVPPVLSNPIRHIHSATVIPEGAGMYRIEFVINGAMYRMIRNIMGTILSVSCGSM
DISNIDHLFASKDRRLVPKSAPAKGLCLEKVIYDEWEPLGAQ
NT seq 1029 nt   +upstreamnt  +downstreamnt
atgtccgcatttgtcactcctccactgccatccccttcgcggggagggcgtgcgcgacct
tctgcaaagcggcggcaactcatcatctgcggcgcggttgcgcctcccgaagccgcgaag
cccggccgcgcctcctcgttcccctccaacccggacaaacagcgcatccgcgcgcgcgtg
gcgtacgacggcacgctctaccgcggctggcagtaccagaccgaccagcccaccgtgcag
ggcgccctcgaggacgcgctgcgtcgcaaattcggccacaccatacgcgtcgtcggcgcc
agccgcaccgacaccggcgtgcacgctcgcggccaggccatgcatttcgacatcccgatt
gcgcgcgccctgcgtgacggggaaagcgagcgcaagtttcactacaccctcaatcagatg
ctgccgccggacgtcagggtgccagtgctcagcgtggccccaacggtcgtgccgtgcaaa
gtgaccgacgagtgcggcaacgttgggattgctactcgaccgtggcatgccatttataat
gccaaggggaaactttacacatatcgtatttcgacgagcccagtcttcgatccactcgga
agactgtacaggtaccatgagtggcgcgcgacaaagtttggcttttctgaagagctcctc
cgtgaggcgtcggctaagtttgttggctcacatgacttttcggccttcacaaattcgact
aatccgccgccagggtttgtacctccggtcttgtccaaccccatccgtcatatacattca
gcgacggtcattccggaaggtgcaggaatgtacaggatagaattcgttattaacggcgcc
atgtacagaatgattcgaaatatcatgggcactatcctcagcgtgtcgtgtggaagcatg
gacatttcaaacatcgatcacctcttcgcatccaaagaccgtcgactagtcccaaaaagt
gcccctgcgaaaggcttatgtcttgaaaaggtcatctacgatgaatgggagccactggga
gcgcaatga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (34)   

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