KEGG   Chondrus crispus (carragheen): CHC_T00010250001
Entry
CHC_T00010250001  CDS       T02916                                 
Name
(RefSeq) DNA Ligase I
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03030  DNA replication
ccp03410  Base excision repair
ccp03420  Nucleotide excision repair
ccp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CHC_T00010250001
   03410 Base excision repair
    CHC_T00010250001
   03420 Nucleotide excision repair
    CHC_T00010250001
   03430 Mismatch repair
    CHC_T00010250001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccp03032]
    CHC_T00010250001
   03400 DNA repair and recombination proteins [BR:ccp03400]
    CHC_T00010250001
Enzymes [BR:ccp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CHC_T00010250001
    6.5.1.6  DNA ligase (ATP or NAD+)
     CHC_T00010250001
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CHC_T00010250001
DNA replication proteins [BR:ccp03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    CHC_T00010250001
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     CHC_T00010250001
DNA repair and recombination proteins [BR:ccp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CHC_T00010250001
   NER (nucleotide excision repair)
    Other NER factors
     CHC_T00010250001
   MMR (mismatch excision repair)
    Other MMR factors
     CHC_T00010250001
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase MptE-like
Other DBs
NCBI-GeneID: 17326653
NCBI-ProteinID: XP_005718922
UniProt: R7QKI6
AA seq 827 aa
MLRVPFSFSAARRVCFSSLYCRDAYLPTDDRRTALTMGKQQGTITSFFRPGGSLSGKKVK
APPKDASKDKSPNTKKRPRPVSNKSKAPDKAVLEEGSSKSVKRSKNEPVDMNNATARAAE
TEKKGSSPEKANEGDDDVVDISQDSAEDGQSSDDVEQDDNSEDIRPKSGKKDQFSSSRLY
TARTWKDGNPVPYKFLSDAFSKVEEISGRLEIQAILTEVFRNIIASTPEDLVPAIYLCIN
KLAPAHEGIELGIGESILMKALSQVSGRTVSALKALYKKVGDLGDVALAARTNQKTMFPP
PPLTVRRVFQEFKAIAAITGKSTQDAKRGKIVKLLVAASTTEAKYVSRAVLGKLRIHLAD
KTVIAALSAALTLEELGVKTDILLTADGKKKTKMTSKEEDIEETLGAAAEVLGSVYSQCP
VWDVIIPKLLELKTIDSRLQAMCKLMPGIPVSPMLAKPTKAISEVLERFAETSFTCEFKY
DGERAQVHRLEDGSIRIYSRNAENLTPKYPDLVDSLPKALHTEYKGASFIIDAEAVAYDV
QKKQILPFQELQGRKRKDVEAHEVTVKVCIFAFDLLFFNGESLIGESLTSRREKLLNGFQ
EQEGQFLFAKGEDSRDPEDIMSLLNRSIKEGCEGLMVKALDGDNSTYEPNNRSQNWLKVK
KDYLEGCGDSLDLVPIGGYLGRGKRAGIYGAFLLACYDPDTEEYQSICKIGTGFSEEALD
NFAKFFNDPEAENKSEGAKSYYRTPALKTLEPDVWFEPVQVWEVKCADLSISPQHTAATG
LVDPEKGIALRFPRFIRLREDKKPDEATNSEQVAEFYMRQSSVANNV
NT seq 2484 nt   +upstreamnt  +downstreamnt
atgctccgtgtaccgttttccttttcagcagcgcgtagagtgtgtttttcttcactctat
tgccgcgacgcttatctccccacagacgataggcgtactgctctcaccatgggcaaacaa
caggggacaatcacatcatttttccgccccggaggctcgttatctggcaagaaagttaaa
gcacctccgaaagacgcttccaaggacaagtctccaaacacaaagaaacggccacgtcct
gtttccaacaaatcgaaagcccccgacaaggcggtacttgaggagggctcctcaaagtct
gtcaagcggtcgaagaacgaaccggttgatatgaacaatgccactgcccgtgcagcagag
actgagaagaaaggctcgtcgccagaaaaagcaaacgaaggtgacgatgatgttgtggac
atttcgcaagactctgcagaagatgggcagagttccgacgacgtagaacaagatgacaac
tctgaagacatacgtcccaagtctggtaaaaaggatcaattttcctcatcccggctatac
acagcgaggacttggaaagatggaaacccggtaccttacaagtttctgtccgatgctttc
agcaaagttgaagaaatctcaggccgccttgaaatccaggccatccttaccgaggtcttt
cgaaacatcatcgcctccacaccagaagatttggtgcccgccatttacctttgcatcaac
aaactcgcccctgcacatgaaggcatcgagcttggaattggggaaagtattctaatgaag
gccttgtctcaggtcagcgggcgcacagtctctgccttgaaagccctttacaagaaagtt
ggtgacctcggcgacgtagcgttggcagcccgcacgaaccagaaaactatgtttccgccc
ccgcctttaactgttcgcagagtgtttcaagaattcaaggcaatagccgccattactggg
aaaagcacacaggatgcgaagcgtgggaaaattgtcaaacttttggttgctgcctcaacg
acagaagcaaagtacgtttctcgcgctgtgctcggcaagctccgaattcatcttgctgac
aagactgttatcgcagccttgtcggcggccttgacccttgaagaactcggtgtcaaaacc
gacattttgttaactgcagatggcaaaaagaaaaccaaaatgacgtcgaaggaagaagac
attgaagaaaccctcggggcggcagctgaggtgcttggatctgtctacagtcagtgccca
gtttgggatgttatcatcccgaagttgctggaactaaagaccattgacagcaggctgcag
gctatgtgcaaacttatgccgggcattccagtttcaccaatgcttgccaaaccgacaaaa
gcaatatcagaagtcctggaacgttttgctgaaacctcattcacatgtgagttcaagtat
gacggagagagagcgcaagtccatcgcctggaagatggaagcatccgaatatacagtcga
aatgcagagaatttaactccaaagtatccagatttagtggatagccttccaaaagcactg
catactgaatacaagggggcatctttcattattgacgcagaagcagtggcgtatgatgtg
cagaagaagcagattcttccattccaggaattgcaaggcagaaagaggaaggacgttgaa
gcccatgaagtcactgtgaaggtatgcatttttgcgtttgacttgctgttctttaatgga
gaaagtcttattggagaatccttaacgtcaagaagagagaagttattaaatggtttccag
gaacaagaagggcagtttttgtttgcaaagggagaagattcgagagatccagaggacatc
atgagccttctgaatagaagcatcaaggaaggatgcgagggtctcatggtgaaggcgctg
gacggtgacaactctacctacgagcctaacaatcgcagccaaaattggctcaaggttaag
aaggattaccttgaaggctgcggggattctctggatttggtgccgattggaggctatctt
ggccgcgggaaaagagcaggtatatacggagcgttcctactggcgtgctacgaccctgac
acagaagagtatcagtcaatctgtaagatcggcaccggcttttcagaagaagcccttgat
aactttgcaaagtttttcaatgaccccgaggctgagaacaagagcgaaggcgcgaaatca
tattatcggacgcctgcattgaaaacgctggaaccagatgtctggtttgagcctgtgcag
gtgtgggaggtcaagtgtgctgatctgtcgatttctcctcaacacactgcagcgacaggg
ctcgtggatcccgaaaagggtatcgcactgcgattcccacggtttatccgtttacgcgaa
gacaagaagccggacgaggcgacgaactcagaacaagttgcggaattttacatgagacaa
tcgtccgttgctaacaacgtgtga

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