KEGG   Chondrus crispus (carragheen): CHC_T00010300001
Entry
CHC_T00010300001  CDS       T02916                                 
Name
(RefSeq) exosome component 5 Rrp46
  KO
K12590  exosome complex component RRP46
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CHC_T00010300001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccp03019]
    CHC_T00010300001
Messenger RNA biogenesis [BR:ccp03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     CHC_T00010300001
SSDB
Motif
Pfam: RNase_PH RNase_PH_C DUF6496
Other DBs
NCBI-GeneID: 17321076
NCBI-ProteinID: XP_005713365
UniProt: R7Q866
AA seq 274 aa
MSVSTASNTRPDALEFSGVGTGVDAMSGTPLSAGRRDGRSASEMRSLSISHGPLVAADGS
ARVRLGATDVVVAVYGPMGCPVPRQDAEQMHVSVAFRRRAGTTSGGAGGKGDSINAGKEA
IAGRDLKKVVEEIVMAILHPRKAAVVAVQVLADNGGVIAAAINGTVMALVDAGMPMRAVP
SAASVSLYNGAIVVDPVLIEEVEADGVITFVFDTSLADENGFMSVYTDGDCTGDSMFAAA
LETSRDLALKTMAFLKLSLEQKAAQRLTWNTTKT
NT seq 825 nt   +upstreamnt  +downstreamnt
atgtcagtcagcaccgcatccaacacgcgccctgatgccctcgagttttccggcgtcggg
acgggcgtcgacgccatgtcaggcacgccgctctccgccgggcgacgggacggccgttcg
gcatcagagatgcgatcgctctccatctcacacgggccgctcgtcgccgccgacgggtct
gcacgtgtgcgtctcggcgcgacggacgtcgtggttgctgtgtacggccctatgggctgc
cccgtcccgcgccaggacgcggaacaaatgcatgtcagcgttgcgtttcggagacgcgca
ggtaccacgtcgggaggagcggggggtaaaggggattcgattaacgcgggtaaggaagca
attgcgggaagggatcttaaaaaggtcgtagaggagatcgtcatggcgattttgcatccc
cgcaaggccgccgtcgtcgcggttcaggtactcgcggacaatggcggagtgattgccgct
gctattaatggtactgttatggccctcgtcgatgcgggaatgccgatgagagcagtgcca
tcggcagctagtgtgtctctgtataacggagccatcgttgttgaccctgttctcatcgaa
gaggttgaggcagatggtgtgattacgttcgtatttgatacatctcttgccgacgaaaac
ggctttatgtcagtctatacagacggcgactgtacaggagattccatgtttgccgccgcg
cttgaaacttcccgcgacctcgccttaaaaacaatggcgtttctcaagctcagccttgag
caaaaagcggcccaacgacttacctggaatacaacaaaaacctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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