KEGG T02895: N149

Campylobacter coli 15-537360: N149_1026

Entry

N149_1026         CDS       T02895

Name

(GenBank) DEAD/DEAH box helicase

K03723

transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]

Organism

ccq Campylobacter coli 15-537360

Pathway

ccq03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:ccq00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    N149_1026
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ccq03400]
    N149_1026
Enzymes [BR:ccq01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     N149_1026
DNA repair and recombination proteins [BR:ccq03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      N149_1026

SSDB

Motif

Pfam:

DEAD Helicase_C UvrB_inter CarD_TRCF_RID TRCF ResIII UB2H

Other DBs

NCBI-ProteinID:

AGZ21461

Position

702800..705736

AA seq 978 aa
MQANFFEYLQDSNIAQLVLCEDDKESFLLSQVALFKDLKTFVLPDFRAEFGDDLRAFSKE
LFELCKVLNAYHKEKDTKILISPLSTILKKLPGQKHLKNYKLSKKNVFNLSEFKNELNKL
GYEFVDMVQDKGEVSIRGEIIDIFCINEELPTRVLLFGDELESIRKFDPMNQKSFPKEYE
ELEICPFLTYFSEENYENFKDKLENFNSDVLINDINSLGFWCIDDFCDYLELDFISIKKF
NQEEWDKDLSKINAKIIPQASVYKDLKSSYNKDFFSLQQNKKITILAKNEALFKALELEN
TQNISFQKSDLILNLISNQELIISLNHKEKQKYKRKANLIIDELKIGDFIVHEDYGVGKF
LGLEMISISGAKKEFVAIEYQNSDKLLLPVENLYMIDKYLGASGGIPLLDRLGKMTFIRL
KERLKTKLLAIASEIVIMAAKRALIKPKEIKIDYADQAYFVSKAGFSYTQDQNKACEEIL
NDFENGKVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFFFAPTTLLSHQHYKSLKKRF
EPFGIEVFKLDRFTSTKEKKTLMLNLEQNKACVVIGTHALLNVECENLALVIIDEEHKFG
VKQKEKLKELTQNSHLLSMSATPIPRSLNQALSSIKSYSVLQTPPEDRLDVRTFVKENDD
ALLKEAITRELRRGGQIFYIHNHIASIEQCKKHLLDLFKNLRILILHSKIDAKIQEEEML
KFENKEYDLLLSTSIVESGIDLPNANTMIVERSDRFGMADLHQLRGRVGRSDRQGYCYFL
VENKEELTQDALKRLVSLESNSYLGAGSVLAYHDLEIRGGGNLLGIDQSGHIEQIGLSLY
LKMLEDELNALTKKESFEEKKIDLKLTINAFLNSELINEDRLRLELYRRLSKCKNIDEVY
EIEGEIEDRFGKLDLYTKQFLMLIIIKILALGKFKTISNFEQNIQFVKINDEKEFIKARS
KDDDDIIEAVLTHLRKDK

NT seq 2937 nt +upstreamnt +downstreamnt
atgcaagcaaatttttttgagtatttacaagattcaaatatagcacaattagtgctttgc
gaagatgataaagaatcttttttgctttctcaagttgctctttttaaggatctaaaaacc
tttgttttacctgattttagagctgaattcggagatgatttaagggctttttccaaggag
ctttttgagctttgcaaggttttaaatgcttatcacaaggaaaaagatactaaaattctt
atttcccctttgtctaccatacttaaaaaattacccggtcaaaaacatttaaaaaattac
aaactttctaagaaaaatgtttttaatttaagtgaatttaaaaatgagctcaacaagctt
ggatatgaatttgtggatatggttcaagataagggtgaggtaagtatacgcggagagatt
attgatatattttgtatcaatgaagaattacctactagggttttgctttttggagatgag
ttggaaagcattagaaaatttgatcctatgaatcaaaaatcatttcccaaagaatatgaa
gaacttgaaatttgtccttttttgacatatttttctgaggaaaattatgaaaattttaaa
gacaaattagaaaatttcaatagcgatgttttgattaatgatattaattctttaggattt
tggtgtattgatgatttttgtgattatttagaacttgattttataagtatcaaaaaattc
aatcaagaagaatgggataaagatcttagcaaaatcaatgctaaaattataccccaagcc
tctgtttataaggatttaaaaagttcttacaataaagacttcttttctttgcaacaaaat
aaaaaaattacgattttggctaaaaatgaagctttgtttaaggctttagagcttgaaaat
acacaaaatatttcttttcaaaaaagcgatttgatccttaatttaattagcaatcaagaa
cttatcatctcattaaatcataaagaaaaacaaaaatataagcgtaaagcaaatttgatt
atagatgagttaaaaattggtgattttatcgttcatgaggattatggtgtgggtaaattc
ttaggtcttgaaatgattagcattagtggagctaagaaagaatttgttgccattgaatat
caaaatagcgataaacttcttttaccggttgaaaatctttatatgatagataagtattta
ggagctagtggaggcataccgcttttagatcgcttgggaaaaatgacttttatcaggcta
aaagaaaggctaaaaaccaagcttttggctattgcttctgagattgttattatggcggct
aaaagagctttaattaaaccaaaagaaatcaagatagattatgcagatcaagcttatttt
gtttcaaaagctggattttcttatacacaagatcaaaataaggcttgtgaagaaatttta
aacgattttgaaaacggcaaagtgatggatagacttttaagcggtgatgtgggttttggt
aaaaccgaagttgcgatgaatgctatttatcccgtggtaaaaagcggtttttgtgctttt
ttctttgcgcctaccacgcttttatctcatcagcattataagagtttaaaaaagcgtttt
gagccttttggcattgaagtttttaaactggatcgctttacaagcactaaagagaaaaaa
actttaatgttaaatttagaacaaaacaaagcctgcgtggtgattggcacccacgcactt
ttaaatgtagaatgtgaaaatttagcgcttgttatcattgatgaggagcataaatttgga
gtaaaacaaaaagaaaaattaaaagaattaacccaaaattctcatcttttatctatgtct
gctactcctataccaaggagtttaaatcaagctttaagctctataaaatcttatagtgtt
ttacaaacccctccagaagataggcttgatgttagaacctttgtgaaagaaaatgatgat
gcgcttttaaaagaggctataacaagagaattaagacgcggcggacaaattttttatata
cacaatcatattgcaagtatagagcaatgtaaaaaacatttacttgatttatttaaaaat
ttaaggattttgattttgcattctaaaattgatgcgaagattcaagaagaagaaatgctt
aaatttgaaaacaaagaatacgatttacttttaagcacttctattgttgaaagcggtatt
gatctgcctaatgcaaatactatgatagtcgaaagaagtgatagatttggaatggctgat
ttgcaccaattacgcggccgtgtaggcaggagtgataggcaggggtattgttatttttta
gttgaaaataaagaagaacttactcaagatgcacttaagcgtcttgtttctttagagagt
aattcttatttaggagcaggttcagttttagcttatcatgatcttgaaattcgcggaggt
ggaaatttgctaggtatcgatcaaagcggacacatagagcaaattggacttagcttgtat
cttaaaatgctagaagatgagttaaatgcacttactaaaaaagaaagctttgaagagaaa
aaaatagacttaaaacttaccatcaatgcttttttaaattcagaacttatcaatgaagat
cgtttaagattggagctttatcgtagacttagtaaatgtaaaaatatagatgaagtctat
gaaattgaaggtgagatagaggatcgctttgggaaattagatctttatacaaagcaattt
ttaatgctgattataattaaaattttagctttggggaaatttaaaaccataagtaatttt
gagcaaaatatacaatttgtaaagatcaatgatgaaaaagagtttattaaagcaagaagc
aaagatgatgatgatattatagaagcagttttaacgcatttaaggaaagataaataa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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