KEGG   Corvus cornix (hooded crow): 104691093
Entry
104691093         CDS       T03546                                 
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
ccw  Corvus cornix (hooded crow)
Pathway
ccw03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ccw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    104691093 (LIG3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ccw03400]
    104691093 (LIG3)
Enzymes [BR:ccw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     104691093 (LIG3)
DNA repair and recombination proteins [BR:ccw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     104691093 (LIG3)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase aRib mRNA_cap_enzyme DUF3802
Other DBs
NCBI-GeneID: 104691093
NCBI-ProteinID: XP_039418657
Position
19:complement(5391476..5405060)
AA seq 983 aa
MPTGGRALSHAARALGRGTALFCPRPQLSLPRPFSCCVRVKPGHWCQLLFQPVSLPATDQ
RGAAGAFRLSLLLGARPRSARTAAEDMAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGK
IVPNPFTESGGDMKEWYHVKCMFEKLDKARATTKKIEDITDLEGWEELQDEEKETINKYI
SEANSKTGGTPKKKVIVQAKLTATGQLTTKDPPKKFSGFTAKPKNSEDAPANSAHKSSLS
ASKCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLRKGSAGDGFHGDVYLTIKLL
LPGVIKIVYNLNDKQIVKLFSRIFNCNQEEMVRDLEQGDVSETIRIFFEQSKTCPPAAKS
LLTIQEVDEFLIQLSKLTKEDDQQTVLQQISRRCTGNDLKCIIRLIKHDLKMNAGAKHVL
DALDPNAYEAFKASRNLQDVVERVLHNQQEAEKAPGLKRTLSVQASLMTPVQPMLAEACK
SIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQAFP
GGQSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPL
CERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLVLKDVKGSYEPGK
RHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSEKWCTVTKCS
GGHDDATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKKAPVWEITGAEFS
KAEAHTADGISIRFPRCTRIRDDKDWQTATNLQQLKELYQLSKEKADFSVVAGEEDESTA
GSSGENDENSRSSTPHSSIKSPPSKSPAKAQKAEESRGVIGSPQKAEEKRGEKRKASEME
DNGKKQPLLDIFTGVKLYLAPSVKDFARIRRYFIAYDGDLVPEFDTASATHVLGDIDANP
GAQRVTARWIWECIRKRRLLAPC
NT seq 2952 nt   +upstreamnt  +downstreamnt
atgcccacgggcggcagggcactgtcacacgctgcccgcgctctcggcaggggcacagcg
ctgttctgccctcgcccacagctctccttgcccagacccttctcttgctgtgtcagagtc
aagcccggccactggtgccagctgctgttccagcctgtctccctgccagccacagaccag
cgcggcgctgccggagcgtttcgtctctccctgcttttgggcgcacggccgcgctcagcc
cgcacagctgcggaggacatggcagagcagaggtactgtgtggactatgccaagcgaggc
accgcgggctgcaagaagtgcaaggagaagatcgtgaaggggatggtgcgcattgggaaa
attgtccccaatcctttcacggagtccgggggggacatgaaggagtggtaccatgtcaag
tgcatgtttgagaagctggacaaggcccgggccaccaccaagaaaatcgaagacatcaca
gacttggaggggtgggaagagctgcaggatgaggagaaagaaacaatcaacaagtacata
tcagaagccaattccaagactggaggtaccccgaagaaaaaggtgatagtgcaggcaaag
ctcactgccacaggacagctgaccacaaaagatccaccaaagaaattctctggattcact
gccaagccaaagaattcagaagatgcccctgcaaactctgcccacaagtccagcctgtct
gcatccaagtgtgatcccaagcacaaggactgcctgctgcgggaattccggaagctctgt
gccatggtggccgaaaagccaagctacaatgtgaaaacacagatcatccaggacttcctc
aggaagggatctgcaggagatggttttcatggtgatgtatacctgaccattaagctgctg
ttaccaggtgtcattaaaatagtttacaacttgaatgataagcagattgtaaagctgttc
agtaggatttttaactgcaaccaggaagaaatggtccgggacctggagcagggagatgtt
tccgagaccatacggatcttcttcgagcagagcaagacttgtcctccagcagccaagagc
ctcctgaccatccaggaggtcgatgaattcctaatccagctgtccaagctcaccaaggag
gatgaccagcagactgtcctgcagcagatcagtcgcaggtgtacgggcaacgacctgaaa
tgcatcatcaggctaattaagcatgacttgaaaatgaatgctggagcaaagcacgtgttg
gatgctctggatcccaacgcctacgaggcgttcaaggcctcgcggaacctgcaggacgtg
gtggagcgggtgctgcacaaccagcaggaggccgagaaggcgccggggctgaagaggacc
ctgagcgtgcaggcctcgctcatgaccccggtgcagcccatgctggctgaggcctgcaag
tccatcgagtacgccatgaagaagtgtcccaacgggatgtacgccgagatcaagtacgac
ggcgagcgcgtgcaggtgcacaagaacggagatcacttcagctacttcagcaggagcctc
aaacctgtgctcccccacaaagtagcccattttaaggacttcatcccccaggctttccct
ggtgggcaaagtatgatcctggattcagaagttctcctaattgacaataaaactggcaag
ccacttccttttgggactcttggtgtgcacaagaaagctgctttccaagatgccaacgtt
tgcctgtttgtgtttgactgcatctacttcaatgacgtcagcctgatggacaggcccctg
tgtgaacggcgcaagttcctccacgacaacatggtggaaatccccaaccggatcctgttc
tcggagatgaaacacgtcacaaaagcttcagacctggcagacatgatcacccgagtcatc
cgggaggggctggaagggctggtgctgaaagatgtcaagggtagttatgaaccagggaaa
cgccactggctgaaggtgaagaaggattatctcaatgagggggcaatggctgacacagct
gacctggtggtgctgggggctttctatggacaaggcagtaaaggtgggatgatgtccatc
ttcctcatgggctgctacgaccccaagagcgagaagtggtgcactgtgaccaagtgctcc
ggtggccacgatgacgccaccctggcacgtctgcagacagagctggacatggtgaagatc
agcaaggatcctagtaaaattccaaggtggctaaaaattaacaaaatctactacccagac
ttcattgtcccagatccaaagaaagcccccgtgtgggagatcaccggggccgagttctcc
aaggccgaggctcacactgcggacgggatctccatccgcttcccgcgctgcacccgcatc
cgcgacgacaaggactggcagacagccaccaacctgcagcagctcaaggagctgtaccag
ctctccaaggagaaggctgatttcagtgtggtggctggagaggaagatgagtccacagct
ggcagcagtggagagaatgatgagaattccaggtcttccacacctcacagcagtattaag
agtcccccaagcaagtcccctgcaaaagcccagaaggcagaagagagcagaggagtcatt
ggatcccctcagaaagccgaggagaaacgaggggagaagagaaaagcatcggagatggag
gacaacggaaaaaagcagccgctgctggacattttcacgggggtgaagctgtacctggcc
ccctccgtgaaggacttcgccagaatccgccgctacttcatcgcctacgacggggacctg
gtgccggagttcgacacggcctcagccacccacgtgcttggggacattgatgccaatccc
ggcgcccagcgggtgactgccaggtggatctgggaatgcatccgcaagcgcaggctgctg
gccccgtgctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (10)   
   Pfam (10)   
All databases (46)   

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