KEGG   Corvus cornix (hooded crow): 104695387
Entry
104695387         CDS       T03546                                 
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
ccw  Corvus cornix (hooded crow)
Pathway
ccw04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:ccw00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    104695387 (COL11A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:ccw00536]
    104695387 (COL11A1)
Glycosaminoglycan binding proteins [BR:ccw00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   104695387 (COL11A1)
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_1 Laminin_G_3
Other DBs
NCBI-GeneID: 104695387
NCBI-ProteinID: XP_010407534
Position
8:complement(19809941..19943010)
AA seq 1807 aa
MEMQRWSSRWKTRRWPWDSAVTVLITFAFLLRTAEVRGAEPVDVLKALEFHNSPEGVTRT
AGFCTNRRNSKGSDVAYRVSKTAQLSAPTKQLYPGGGFPEDFSILMTVKPKKGIQSFLLS
IYNEQGIQQVGVEVGRSPVFLFEDQNGKPAPEDYPLFRTVNIADGKWHRVAISVEKKSVT
MIVDCNKKTTKPLDRSDKTVVDTNGITVFGTRILDEEVFEGEIQQLLIIADPRAAFDYCE
HYSPDCDSPVPNAAQAQDPQVDEYTPEDFIEYDYEYGDADYKETDSVTEGLPLFEETVAQ
TEANVIDGFQDYSIAENDYGPQTEAPSRTTEANEQNPVEEVFAEEYITGEDYDKKTEATE
YGSRGVDPSESDLLVDGDLGEYDFYEYKEYEDKPTDSTNEEFGPGVPAETDITETSVTGH
GAYGEKGQKGEPAVIEPGMLIEGPPGPRGPAGLTGPPGLQGPVGPPGDPGERGPPGRPGL
PGADGLAGPPGTMLMLPFRFGGDGEKGPTISAQEAQAQAILQQARIAMRGPPGPMGLTGR
PGPVGGPGAAGAKGESGEPGPQGPRGVQGAPGPSGKAGKRGRPGADGARGMPGEPGAKGD
RGFDGLPGLPGDKGNRGDRGPQGPPGLPGEDGSRGEDGEVGPRGLPGEAGPRGLLGPRGT
PGPPGQPGIAGIDGPSGPKGNMGPQGEPGPPGQQGIPGPQGLPGPQGPIGPPGEKGPQGK
PGLPGLPGSDGPPGHPGKEGQSGDKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGE
KGEDGFPGFKGDMGLKGDRGEIGQPGPRGEDGPEGPKGRAGPSGDPGAAGPAGEKGKLGV
PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGLHGKPGPRGQRGPTGPRGSRGPRGPTGK
PGPKGTSGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGK
TGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGIPGK
DGPAGLRGFPGERGLPGAQGPAGLKGGEGPQGPPGPMGSPGERGAAGTAGPIGLPGRPGP
QGPPGPAGEKGAPGEKGPQGPAGRDGIQGPVGLPGPAGPSGSPGEDGDKGEIGEPGQKGS
KGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGPRGFPGPPGPIGL
QGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGE
AGNPGPPGESGTSGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGP
PGEPGPAGQDGVGGEKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGATGAEGRQGEKGA
KGEPGAEGAPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGMPGAPGQDGPPGPLGPPGL
PGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGAKGDAGISGPAGPLGP
PGPPGLPGPQGPKGSKGSSGPAGQKGDSGLPGPPGPPGPPGEVIQPLPIQSPKKTRRSPD
YMLSDAGDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQNNPARTCKDLQLCHPDFPD
GEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKENPGSWFSEFKRGK
LLSYLDVEGNSINMVQMTFLKLLSASARQNFTYNCHQSVAWHDAPSDSYDKALRFLGSND
EEMSYDNNPYIKALHDGCASRKGYAKTVLEINTPKIDQVPIVDVMINDFGDQNQKFGFEV
GPVCFLG
NT seq 5424 nt   +upstreamnt  +downstreamnt
atggagatgcagagatggtcctcaaggtggaaaacgagaaggtggccttgggactcggct
gtaaccgtgctcatcaccttcgctttccttctccggactgcagaggtcagaggagctgaa
cccgttgatgtgctaaaagcattagaatttcacaattctccagaaggagtaacaagaaca
gcaggattttgcacaaacagaaggaattcaaaaggatcggatgttgcttacagagtttca
aaaactgcacagctgagtgccccaacaaagcagctgtacccaggtggtggttttccagaa
gatttttcaatattaatgacagtaaaacctaaaaagggtattcagtctttccttttgtct
atctacaatgaacaaggaattcaacaagtaggtgttgaagttggtagatcccctgtcttt
ctatttgaagaccaaaatggaaaacctgctccagaagactatcctcttttcagaacagtc
aacatcgctgacggcaagtggcatcgagtagctatcagtgtggagaaaaagagtgttaca
atgattgttgactgtaacaaaaaaactacaaaaccacttgacagaagtgacaaaacagtt
gtggacaccaatggcatcactgtctttggaaccaggattctggatgaagaagtttttgag
ggtgagatccagcagctgttgattatagctgatcccagagctgcatttgactattgtgag
cattatagcccagactgtgactccccagtgcccaatgctgctcaagctcaagatcctcaa
gttgatgagtacacaccagaagattttatcgaatatgactatgagtatggggatgcagat
tataaagaaactgattctgtaacagagggactcccactgtttgaagagacagtagcacag
acagaggccaacgttattgatggatttcaagattatagcatagccgaaaatgactatgga
ccccagacagaagctccctccagaactactgaagcaaatgagcaaaatcctgttgaagaa
gtatttgctgaagaatacataactggagaggattatgataaaaaaactgaggcaactgaa
tatggaagcagaggagtagaccccagtgaatctgatctgctggtagatggagatttagga
gaatatgatttttatgaatataaagaatatgaagacaaaccaactgattccactaatgag
gagtttggtccaggtgttcctgcagagaccgatatcacagaaacaagcgtgacaggacat
ggagcttatggagaaaaaggccaaaagggagaaccagctgtgattgaacctggtatgctc
attgaaggaccaccgggaccaagaggacctgctggtcttacaggtcccccaggtctacaa
ggtcctgttggtcctccaggtgaccctggtgaaaggggtccacctggtcgccctggtctt
cctggtgctgatggtttagcaggtcccccaggtaccatgttaatgttgccgttccgcttt
ggtggagatggtgagaagggcccaacaatctccgcacaggaagctcaagcacaagctatt
cttcagcaagctaggattgctatgagaggtccacctggtcctatgggactcactggaaga
ccaggtcctgtgggtggacctggagcagcaggtgctaagggtgaaagtggtgaaccaggt
ccccagggtcctcgtggtgtccaaggtgcccctggtccaagtggaaaagctggcaaaagg
ggacgtcctggagctgatggtgccagaggaatgccaggagaacctggtgcaaagggtgac
agaggatttgatggtcttcctggcctccctggtgacaaaggtaaccggggagaccgtggc
ccacagggacctcctggcttacctggtgaagacggatcaagaggagaagatggggaagtt
ggaccaagaggtctcccaggtgaagctggtccacggggattactgggccccagaggaaca
cctgggccccctggacaacctggcattgcaggtattgatggaccttcaggcccaaaggga
aacatgggtcctcaaggggaaccaggacctcctggtcagcaaggaattccaggcccacaa
gggcttcctggtcctcaaggtcctattgggcctcctggtgaaaaaggaccgcaaggcaag
cctggcctgcctggccttcctggttctgatgggcctcctggtcatcctggcaaagagggt
cagtctggagataaaggtgcattggggcctccaggtcctcagggtccaattggatatcca
ggacctcgtggtgtaaagggtgctgatggtgtacgtggactcaagggatccaaaggtgaa
aagggtgaagatggttttccaggatttaaaggtgacatggggcttaaaggtgaccgggga
gaaattggtcagccaggtccacgaggagaagatggcccagaaggtccaaaaggtcgagcg
ggtccatctggggacccaggtgctgctggtccagctggggaaaagggaaagcttggtgta
cctggattgccaggatatccaggaagacaaggtccaaagggctcaactggtttcccagga
tttccaggtgccaatggagagaaaggtgcaaggggattgcatggcaaaccaggccccaga
ggacagcgaggaccaacaggtccaagaggctcaagaggtcccagaggtcccactggtaaa
ccaggtccaaagggcacttcaggcaatgatggtcctcctggcccaccaggcgaaagggga
ccgcaagggccccagggacctgttggattccccggaccgaagggacctccaggtccacct
ggaaaagatggcttgcctgggcacccaggacagcggggggagactggttttcaaggaaaa
actggtcctcctggtcctggtggtgttgttggccctcagggtcctactggtgagacgggg
ccaattggtgaaagaggtcacccaggtcctcctggtcccccaggtgaacaaggcctccca
ggtgctgcaggaaaagaaggtgctaagggtgatccaggccctcaaggcattcctgggaaa
gatggaccagcaggtcttcgtggtttccctggagagagaggccttccaggtgctcagggt
ccagctggtctgaaaggaggggaaggcccacagggtccacctggaccaatgggctcgcca
ggagagcgaggagctgcgggcactgctggccccattggtctgccaggccgtcctggcccc
caggggcctccaggccccgcaggagagaagggcgctcccggtgaaaaaggtccccaaggt
ccagctggacgtgatggaatacagggtcctgtaggacttcctggtcctgctggtcctagt
ggttctcctggagaagatggtgacaagggtgaaattggtgaaccaggtcagaaaggtagt
aaaggcgacaaaggagaaaacggtcctccaggtccaccaggtctgcagggtcctgttggt
gccccgggtatagctggaggtgatggagagccaggcccaagaggtcagcaagggatgttt
gggcaaaaaggtgatgaaggtcctcgaggcttccctggccctccaggccctattggctta
cagggtctgcctggtccaccaggtgaaaaaggtgaaaatggtgatgtgggcccaatgggt
ccacctggcccgccaggtccaagaggtccccagggtcccaatggagctgatggtccccaa
ggccccccaggctcaattggctctgttggaggtgttggtgaaaagggtgagcctggagaa
gctggtaatcctggacctcctggagaatctggaacatctggtccaaaaggtgaaagggga
gaaaaaggtgaagctggtccacctggagcagccggaccaccaggtgctaaaggacctcca
ggtgatgatgggcctaagggtaacccaggcccagttggttttcctggagatcctggtccc
cctggggaacctggcccagctggtcaggatggtgttggtggagagaagggtgaagatggt
gatcctggtcaacctggtccaccaggtccttcaggtgaagctggcccacctggtcctcct
gggaaaagaggacctcctggagcaacgggtgctgaaggcagacaaggtgaaaaaggtgca
aagggtgaacctggtgcagaaggggctcctggaaaaacagggccagttggtccacaggga
cctgcaggaaaacctggcccagagggtctccggggcattcctggccctgtgggagaacaa
ggtatgcctggagcaccaggtcaggatggccctcctggacctctgggcccaccaggcttg
cctggactgaaaggagatccaggctccaaaggagagaagggacatcctggtttgattggc
ctgattggacctccaggagaacagggtgaaaagggtgataggggtcttcctggcccacag
ggatctcctggagccaagggtgatgcaggaatttctggtcctgctggtccacttggaccc
cctggtcctcctggattacctggtccccagggtccaaaaggttccaaaggatccagtggt
cctgcaggtcagaagggtgatagtggcttacctggtccacctggccctccaggtcctcca
ggtgaggttatccagccactgccaatccagtcacccaagaagacaagaagatctcctgac
tatatgttatctgatgctggtgataatattctggattattccgatggcatggaggagatc
tttggttcgctgaattcactgaagcaagacattgagcacatgaagtttcccatgggcact
cagaataacccagcccggacctgcaaagatttgcagctctgccacccggacttcccagat
ggggaatattggattgatcctaaccagggctgttccggagattccttcaaagtatactgc
aatttcacagcaggtggggaaacttgcatctacccagataagaaatctgaaggagttaga
atttcatcgtggccaaaggagaatccaggatcttggtttagtgaatttaagcgaggcaaa
cttctttcctatttggatgttgaaggcaattccattaatatggtccaaatgacattcctt
aaactactgagtgcctctgccagacaaaatttcacttacaactgtcaccagtctgtagcc
tggcacgacgcaccctctgacagctatgacaaagcactaaggttcttaggatccaatgat
gaagaaatgtcttatgacaacaatccttacatcaaagctctccatgatggctgtgcatca
agaaagggctatgcaaagacggtgctggaaatcaacacgcccaaaatagaccaagtgcct
atagttgatgtgatgatcaatgactttggtgatcagaaccagaagtttggatttgaggtc
ggtcctgtctgcttccttggttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (5)   
   Pfam (5)   
All databases (55)   

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