KEGG   Corvus cornix (hooded crow): 104698644
Entry
104698644         CDS       T03546                                 
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
  KO
K12835  ATP-dependent RNA helicase DDX42 [EC:3.6.4.13]
Organism
ccw  Corvus cornix (hooded crow)
Pathway
ccw03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104698644 (DDX42)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccw03041]
    104698644 (DDX42)
Enzymes [BR:ccw01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     104698644 (DDX42)
Spliceosome [BR:ccw03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    104698644 (DDX42)
 Complex B
    104698644 (DDX42)
 Complex C
   U2 SnRNP specific factors
    104698644 (DDX42)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII P-loop_SecA ERCC3_RAD25_C DUF460
Other DBs
NCBI-GeneID: 104698644
NCBI-ProteinID: XP_039420442
Position
23:complement(4645033..4661363)
AA seq 941 aa
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPESPIAAMVAAKGVPGFTSTGNLSSVPT
FPSVGAQGFNNTNTSTNSREGGGGVGGVVRERYNDNRPSRHGEAPRRGEGGGRAEGGGRY
NDVQRYNDVQRHGEGGGRHSDPSRHGDGRHGDVHRHSEGRHFTDFPGGGNRNNGDSRNST
EGRNSESRNGENRKDANSRDNKTDGFAVPEPPKRKKSRWDS
NT seq 2826 nt   +upstreamnt  +downstreamnt
atgaattggaataaaggcggacctggtacgaagagaggcttcgggtttggtggatttgcc
ataacacctgggaagaaagaggagcccaagctgtctcagcagtcccacagtgcttttggc
acagccggctcctcggcagcgttcgcaaaatcggggcctcctcagctgccttccttctac
aaaatcgggtcaaagagagcaaattttgatgaggagaatgcgtactttgaggatgaagag
gaagattccagcaatgtggaattgccctacattcccgcagagaattcccccactcggcag
cagttccattccaaatctgcagactctgacagtgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagactcgaagataaagacaaagaa
aaaaagaacgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcatat
tttcgctacatggctgagaaccccactgctggtgtggtgcaagaggaggaagaggataac
ctggagtacgatagtgatgggaatccgattgcaccgtccaaaaaaatcattgatcctctt
ccacctattgaccattcagagattgaatacccaccatttgagaaaaatttctacgatgag
cacgaggagatcaccagcttgaccccgcagcaagtggtggagttacggcacaagctgaat
ctccgggtctccggggctgctcctccaaggcctggcagtagttttgctcattttgggttt
gatgagcaacttatgcatcagattaggaaatctgagtatacccaacccactccaatacag
tgtcagggtgttccagtggccctaagtggcagagacatgattgggattgctaagactgga
agtgggaaaacagccgccttcatctggccaatgctgatccacatcatggatcagaaggag
cttgaaccaggggatggtcccattgcagtgatcgtctgcccgaccagggagctctgccag
cagatccactccgagtgcaagcgctttggcaaggcgtataacctgcgctccgtggctgtg
tatggaggagggagcatgtgggagcaagccaaggccctgcaggagggggcagagatcgtg
gtctgcactccaggtcgtttgattgatcatgtgaaaaagaaagctacgaaccttcagaga
gtcacttaccttgtgtttgatgaagctgacagaatgtttgatatggggtttgagtatcag
gtcagatcaattgcaagccacgtacgtcctgacagacagaccctcttgttcagtgccacg
ttccgtaagaagattgagaaattggcccgggatattctgattgacccaattcgggttgtg
caaggagacattggagaggcaaatgaagatgtcactcagattgtggagatcttcccctct
gggcccagcaagtggaactggctgacacggcgcctcgtggagttcacgtcctccgggagc
gtcctcctctttgtcaccaagaaagccaacgcagaggaactggccaataacctcaagcag
gaggatcataacctggggctgcttcatggggacatggaccagagtgagagaaataaagtc
atttcggagttcaagaaaaagggcatccccatactggtagctactgatgtggcagctcga
gggttggatatcccttccatcaagactgtcatcaactatgacgtggctcgggacatagac
acccacacccaccggatcggccgcaccggccgcgcgggggagaagggcgtcgcttacact
ctgctgacccccaaggacagcaacttcgctggtgacctcgtcagaaacctggagggtgcc
aaccaacacgtctccaaagagctgctggatctggcaatgcagaatccgtggttccggaaa
tcccgttttaaaggagggaaaggcaagaagctgaatattggtggtggaggcttgggatac
cgcgaacgccccgggctgggctcagaaaataccgaccgtggaaacaacaacagtgtgatg
agcaactacgaggcctacaagccatccacgggggccatgggggacaggctgacagcaatg
aaagcagctttccagtcccagtacaagagtcactttgttgctgcaagtttaaataaccaa
aagactgggagctctgctgctggtgccagcggctggaccagcgctgggagcctgaactcc
gtcccgacgagttcagcgcagcaaaacgctgccaaccccgagagccccatcgcggccatg
gtggcagcaaagggtgtcccgggcttcaccagcaccggcaatctgagcagcgttcccacc
ttcccgagtgtcggagcacagggcttcaacaacacaaacaccagcaccaacagtcgagaa
ggcggcggcggcgttggtggcgttgtcagagaacggtacaacgacaaccggcccagtcgc
cacggcgaggccccgcggcgtggggagggcggtggccgcgcagagggtggcggccgctac
aacgacgtccagcgctacaacgacgtccaacgccacggtgaaggtggcggccgccacagt
gacccctcccggcacggtgacggccgccacggggacgtccatcgccacagcgagggccgg
cacttcaccgacttcccgggcggtgggaaccgcaacaacggcgacagcaggaacagcact
gaagggaggaacagcgagagcaggaatggagagaacaggaaggatgccaacagccgggac
aacaagacagatggttttgctgtcccagagcccccaaaacggaagaagagccggtgggac
agttaa

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