KEGG T01780: COCOR

Corallococcus coralloides: COCOR_00956

Entry

COCOR_00956 CDS T01780

Gene name

ligD

Definition

ATP dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

ccx Corallococcus coralloides

Pathway

ccx03410	Base excision repair
ccx03420	Nucleotide excision repair
ccx03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:ccx03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:ccx03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:ccx03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme DNA_ligase_OB_2

Other DBs

NCBI-GI:

383452973

NCBI-GeneID:

11986060

UniProt:

H8MLH4

Position

complement(1149678..1152236)

AA seq 852 aa
MKTSDTQRRLRRYRTKRDFHLTPEPSPDAKAPKSSAPVFVIHKHDATRLHYDLRLEIGGV
LVSWAIPKGPSHDPSVKRLAVQTEDHPRSYADFEGHIPDDQYGGGDSLLWESGTFEVVPP
GDAEAQLKRGHLEVVLHGAKLKGRWHLIRTRPRGGKAQWLFFKAKDDYAKAGYDVTVERP
ESVKSGQVETQGPRKPGVLRNKKPAAPVRKAAKKPARLPSTPEKLLERVWPPMLARLAVS
DEVHDETHAYEVKYDGFRAVCALTHGKIAFQSRRGNDLSGRFARLTAALRELPAKDVVVD
GEIVALDAKGRSRFQILQNTEEGAEQRFMVFDLLWLDGEDLRELPYEERRARLEKLMAGA
QLPLQLSEKVDLPLSRGLLEARRKGWEGLIAKRKDSPYTGTRSGDWLKLKVVAGQEVVIL
GYLPIKNAKAKSEIGALRVGVRGKEGFHDVGKVGTGYTSKDRRELRWLLDATRVKKPAAV
DAPTNTDTVWVKPKYVAQVNFTEWTKDGRLRHPVFQGLRSDKVPQEVVREHPAPIEGAAR
RGSRRAPVQAAARTAKAPAVKTPRGKSRHAPEVVLTHGDRVLFPQAGLTKADVFAYYEQA
APLLLPVLADRPLAHQQWPGGIQAPGFFRHELSGIPAWMPTLRVRHEDKTLRHVNVKDTS
ALLWLANQSALTLHMWLSHAPRLAQPDFVVFDLDPGEGGWKDVVKVATLLHARLDELGLK
SFPKTSGKRGLHVLVPLAPGHTYARTQAFADARARELEEELGDIATTERSIRERGGRLYI
DAGQNARGKTVVAPYSLRAVEGAPFSAPLEWSEVNSRLDPHRFRLKTLKKRLDAVGDLFA
PVLRVKQVLPDE

NT seq 2559 nt +upstreamnt +downstreamnt
gtgaagacctccgacacccagaggcggctgcgccgctaccggacgaagcgcgacttccac
ctcacgcccgaaccgtcgccggacgcgaaggccccgaagtcgagcgcgcccgtcttcgtc
atccacaagcatgacgccacgcggctgcactacgacctgcgcctggagattggcggcgtg
ctggtgagctgggccattcccaagggccccagccacgacccttccgtgaagcggctcgcg
gtccagacggaggaccacccgcgctcctacgcggacttcgagggccacatcccggatgac
cagtacggcggcggggattcgctgctctgggagtccggaaccttcgaggtcgtgcctccc
ggcgacgccgaggcgcagctgaagcgcgggcacctggaggtcgtgctgcacggcgcgaag
ctcaaggggcgctggcacctcatccgcacgcgtccgcgcggtggcaaggcgcagtggctc
ttcttcaaggcgaaggacgactacgccaaggccggctacgacgtcaccgtggagcgcccc
gagtccgtgaagagcggacaggtggagacgcaagggcctcgcaagcccggcgtgctgcgc
aacaagaagcccgcggcgcccgtgcgcaaggccgcgaagaagccggcccgtctcccctcg
acgccggagaagctgctggagcgcgtgtggccgcccatgctggcgcggctggccgtgtcc
gacgaggtgcacgacgaaacgcacgcctacgaggtgaagtacgacggcttccgcgccgtg
tgcgcgctcacgcacggaaaaatcgccttccagagccgccggggcaacgacctgtcgggc
cgcttcgcccggctcaccgccgcgctgcgggagctgcccgcgaaggacgtcgtcgtggac
ggagagattgtcgcgctcgacgcgaagggccgctcgcgcttccagattctccagaacacg
gaagagggcgcggagcagcgcttcatggtgttcgatctgctgtggctggacggcgaggac
ctgcgcgagcttccctacgaggagcgccgcgcgcggctggagaagctgatggccggggcg
cagctgcccctgcagctctccgagaaggtggacctgccgctgtcgcggggcctgctggag
gcccggcgcaaggggtgggaggggctcatcgccaagcgcaaggactcgccgtacacgggc
acgcgctccggggactggctgaagctgaaggtggtcgcgggccaggaggtcgtcatcctg
ggctacctgcccatcaagaacgcgaaggcgaagtcggagattggcgcgctgcgcgtgggc
gtgcgcggcaaggaaggcttccacgacgtgggcaaggtgggcacgggctacacgtcaaag
gaccgccgcgagctgcgctggctgctggacgccacgcgcgtgaagaagcccgccgccgtg
gacgcgcccacgaacacggacaccgtctgggtgaagccgaagtacgtggcccaggtgaac
ttcaccgaatggaccaaggacggccgcctgcgccaccccgtgttccagggcctgcgcagc
gacaaggtgccgcaggaggtcgtgcgcgaacaccccgcccccatcgaaggcgccgcacgc
cggggctcgcggcgcgcgccggtgcaggccgccgcccgcaccgcgaaggcgcccgccgtg
aagacgccgcgcgggaagtcccggcacgcgccggaggtggtcctcacgcacggcgaccgc
gtgctgttcccccaagccggcctgacgaaggcggacgtgttcgcgtactacgagcaggca
gcgccgctgctattgcccgtgctcgcggaccggcccctggcccatcagcagtggcccggg
ggcatccaggccccgggcttcttccggcacgagctgtccggcatccccgcgtggatgccc
acgttgcgcgtgcgccacgaggacaagacgctgcgccacgtgaacgtgaaggacacgtcc
gcgctcctgtggctcgccaaccagtccgcgctcacgctgcacatgtggctgtcccacgcg
ccccggctggcgcagccggacttcgtggtgttcgacctggaccctggcgagggcggctgg
aaggacgtggtgaaggtggccaccctgctgcacgcgcgcctggacgagctggggctcaag
tccttcccgaagacctccggcaagcgcggcctgcacgtgctggtgcccctggcgccgggc
cacacctacgcgcgcacccaggcgttcgcggacgcgcgggcgcgtgagctggaggaggag
ctgggcgacatcgccaccacggagcgctccatccgcgagcgcggcgggcggctctacatc
gacgcgggccagaacgcgcgcggcaagacggtggtggcgccctactccctgcgcgccgtg
gagggcgcgcccttctccgcgccgctcgaatggagcgaggtgaacagccgcctggacccg
caccgcttccgcctgaagacgctgaagaagcgcctggatgccgtgggggacctgttcgcg
cccgtgctccgggtgaagcaggtgctgccagacgagtga

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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