KEGG T01698: CDBH8

Corynebacterium diphtheriae BH8: CDBH8_1016

Entry

CDBH8_1016        CDS       T01698

Symbol

rho

Name

(GenBank) transcription termination factor Rho

K03628

transcription termination factor Rho

Organism

cdb Corynebacterium diphtheriae BH8

Pathway

cdb03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:cdb00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CDBH8_1016 (rho)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cdb03021]
    CDBH8_1016 (rho)
   03019 Messenger RNA biogenesis [BR:cdb03019]
    CDBH8_1016 (rho)
Transcription machinery [BR:cdb03021]
Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     CDBH8_1016 (rho)
Messenger RNA biogenesis [BR:cdb03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     CDBH8_1016 (rho)

SSDB

Motif

Pfam:

ATP-synt_ab Rho_RNA_bind Rho_N Spore_III_AA AAA_25 NACHT AAA_22

Other DBs

NCBI-ProteinID:

AEX48539

Position

1023517..1025589

AA seq 690 aa
MTNTDNSAQRNLAALRLPELRKIAAEMGLKGTSALRKGDLIAAINGTSAAHPTSVAPSEE
NKADAPKKERPARRRATKHVAQDAGSEPAPVVTEVAAPAEQNPAPKQEKEAPAGESERQP
RRRRAVKTSVKTTQEEPTEVRVAEAAEATDKSSEEQSAEAGSEDKDNYHYESRSAARRAR
RNRARREQREYNRPGTKDESEASQPENENSRNDVAPESSEVADNSNEQARSDQADQPTKS
DSNDNGREDNRRGNRHERGERGDRNDRGDRNRRNRRNRRGRDRDDNRDNRENNNNEPRED
EVLQNVAGILDIVDNNVAFVRTSGYHAGAADVYVNNQMIRRLGLRSGDAIVGQVRMNGEN
NHGGHNRGRNRQKYNPLVRVDSVNGMTVEEAKARPEFAKLTPLYPNQRLRLETEPKVLTT
RVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAIATNNPECYLMVVLVDERPEEVTDM
QRSVKGEVIASTFDRPPSEHTAVAELAIERAKRLVEQGQDVVVLLDSITRLGRAYNNSSP
ASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTVIFEEFKGTG
NAELKLDRKISERRVFPAVDVNPSGTRKDELLLAPEEARIMHKLRRMLSALDNQQAIDLL
IKQLKKTKSNGEFLMQVASSAPMAADAEED

NT seq 2073 nt +upstreamnt +downstreamnt
gtgactaatacagataacagcgcacagcgtaatctcgctgctctgcgtttgcccgaactg
cgcaaaattgccgcagaaatgggcctgaaaggtacgtccgccctgcgtaagggtgatcta
attgcggctattaacggtacctctgccgctcatccaacatctgtggccccctcggaagag
aacaaagcagatgcaccaaagaaggaacgtccagcacgtcgtcgtgcgactaagcacgtt
gcccaagatgccggttccgagccagcgccagtggtaacagaagttgctgcgcctgcagaa
cagaatcctgcgccaaaacaagaaaaagaagctccagctggtgagtccgagcgtcagcca
cgccgtcgtcgtgcagtaaagacgtctgtgaaaacaacgcaggaggaacccactgaggtt
cgcgtagcagaagctgcagaagctactgacaaatcttctgaagagcagtccgctgaggca
ggttctgaggataaagataactaccactacgagtctcgttctgccgctcgacgtgcccgt
cgtaaccgtgctcgtcgtgagcagcgcgaatacaatcgccctggcactaaagatgagagc
gaagcatctcagccagaaaatgagaactctcgcaacgacgtcgcaccagaatcctcggag
gtagcagacaacagcaacgagcaagctcgttctgatcaagctgatcaacccaccaagtcg
gactctaacgacaatggtcgtgaggataaccgtcgtggcaatcgacacgagcgtggggag
cgtggcgatcgtaacgatcgtggggaccgcaaccgtcgtaatcgtcgtaaccgtcgtggc
cgtgaccgtgatgataaccgtgataatcgcgaaaataacaacaacgaaccacgtgaagat
gaagtcttgcaaaatgttgcaggcatcttggacatcgtggacaacaatgttgctttcgtg
cgtacctccggttaccacgccggtgctgctgacgtctatgtgaacaaccagatgattcgc
cgcttgggattgcgttctggcgacgcaattgtgggccaagttcgtatgaatggcgaaaac
aaccacggcggacacaaccgtggccgtaaccgccagaagtacaacccattggtacgcgtt
gattcagtcaacggaatgacggtggaagaagcaaaggcacgccctgagtttgccaagctc
accccgttgtaccccaaccagcgtctgcgcctcgaaaccgagcctaaggttttgactacc
cgtgtgatcgatttgatcatgccgattggtaagggtcagcgtgctttgatcgtgtctcct
cctaaggctggtaagaccacgatcctgcaaaatatcgcaaacgctattgctaccaacaac
ccagagtgctacctcatggttgttttggtggatgagcgtccggaagaagttaccgatatg
cagcgttctgtgaagggcgaagttattgcatcgaccttcgaccgtccaccaagtgagcac
accgctgttgcagagctcgctattgagcgtgcgaagcgccttgtggagcagggacaggat
gttgtagtactcctagactccattacgcgtcttggccgtgcctacaacaacagctcacct
gcatccggccgaattctctccggtggtgtggactccaacgcgttgtacccaccaaagcgt
ttccttggtgcggctcgcaacatcgaaaatggtggatcgcttacgattatcgccacggcc
atggttgagactggttctgccggcgacaccgtgatcttcgaggaattcaagggcaccggt
aacgccgagctgaagctggatcgtaagatttctgagcgccgtgtattcccagctgtcgac
gtcaacccatcgggtacccgtaaggatgagttgctgctggctccggaagaagctcgcatt
atgcacaaactccgccgcatgctttctgctttggataatcagcaggctatcgatttgttg
atcaagcagctcaagaagaccaagtccaatggtgaattcttgatgcaggtagcaagttct
gcgccgatggctgcggatgctgaggaggactaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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