KEGG   Clostridioides difficile CD196: CD196_2045
Entry
CD196_2045        CDS       T00997                                 
Symbol
csdA
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
cdc  Clostridioides difficile CD196
Pathway
cdc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cdc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CD196_2045 (csdA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cdc03019]
    CD196_2045 (csdA)
   03009 Ribosome biogenesis [BR:cdc03009]
    CD196_2045 (csdA)
Messenger RNA biogenesis [BR:cdc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CD196_2045 (csdA)
Ribosome biogenesis [BR:cdc03009]
 Prokaryotic type
  rRNA helicases
   CD196_2045 (csdA)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_22 AAA_19 DNTTIP1_dimer ZapA
Other DBs
NCBI-ProteinID: CBA63924
UniProt: A0A0H3N3K9
Position
complement(2366530..2368023)
AA seq 497 aa
MKYTFEKFKLNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIP
LCENINVDCNNIQALIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQIAELKQ
RVHIVVATPGRILDHINKGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVS
LFSATIDEEIKYICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELI
YSENPKSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILV
SSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDEKYIENI
ETYIGYKVNELKDIEKSRITHGKILFEEYSKGILKKVSKRKKVDKNSYKSKDIKLNIESE
VVKLYLNAGKKKKIRVLDIVGAFSNIKGITNDDIGVIEVQDLCSYVDILNYKGDLILKKY
KEIPIKKKMVKVKRDIR
NT seq 1494 nt   +upstreamnt  +downstreamnt
atgaaatatacatttgaaaaatttaagttaaatgaaaagatacttaagtcattgaagagt
ttaggatataatataccttctagagtacaaagagaagttattccaaaattattaaaaggt
caaaacttagtagttaggtcaaaaacaggaagtggaaagacagcaagttttgcaatacct
ttatgcgagaatataaatgtagattgcaataatattcaagctcttatagtggttccaaca
agagaattagccttgcaagtaaaagatgagatatcagatatagggagactaaagaaggtg
agatgtagtgctatatttggcaaacaatctataaaagaccaaatagctgaattgaaacaa
agggttcatattgttgtagctactccaggcagaatacttgaccatataaataaaggttct
attaagttggaaaatgtaaagtatttagtaatagatgaggcagataaaatgtttaataaa
ggttttgttgaacaaatggaaaaaatattattaaatttacctaaggagaaaatagtaagt
cttttttcagctacaatagatgaagagataaaatatatatgtgaaaaatatatgctagat
tacagtgttataaatatagaagaaaatgagagcgatactaatcaaaaaacaagacaaata
gatgacaaaataatcaaggcaaatggaagagagaagtacatccttttaaaagaattaata
tacagcgaaaatccaaagagtgtgataatattttgtaataccaaagagaaagtatctaaa
ttatataataagatgagtaaagagggttttttaataagagagttacatgcagatttatca
caagaaagaagaatttttgtaattaaggattttaaaaaccaaaaatttaatatattagtt
agtagtgatgtagcgtccagaggaatacatattgatgatatttctttagtaataaattat
gatgtgccacaagataaagaaaactatatacatagaataggtagaactgggagaaaagga
aatagtggaaaggcaattactatagtaactgaaaaggatgaaaaatatatagagaatata
gaaacgtatataggatataaagtaaatgaattaaaagatatagaaaaaagtagaattaca
catggcaaaattttgtttgaagaatattcaaaaggaatcctaaaaaaagtatcaaagaga
aaaaaagttgataaaaattcttacaaaagtaaagatataaaactaaatatagaaagtgaa
gttgttaaattatatttaaatgctggtaagaagaagaaaataagagttttagatatagtt
ggtgcatttagtaatataaaaggtataactaatgatgatataggtgtaattgaagttcaa
gatttatgttcatatgtagatatattaaattataagggagatttgatattaaaaaaatat
aaggagatacctataaagaaaaaaatggttaaagtgaaaagagatatacgataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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