KEGG   Corynebacterium diphtheriae C7 (beta): CDC7B_1764
Entry
CDC7B_1764        CDS       T01699                                 
Symbol
rne
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
cds  Corynebacterium diphtheriae C7 (beta)
Pathway
cds03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cds00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CDC7B_1764 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cds03019]
    CDC7B_1764 (rne)
   03009 Ribosome biogenesis [BR:cds03009]
    CDC7B_1764 (rne)
Enzymes [BR:cds01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     CDC7B_1764 (rne)
Messenger RNA biogenesis [BR:cds03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CDC7B_1764 (rne)
Ribosome biogenesis [BR:cds03009]
 Prokaryotic type
  rRNA processing factors
   CDC7B_1764 (rne)
SSDB
Motif
Pfam: RNase_E_G IF2_N DnaJ_CXXCXGXG DUF2362
Other DBs
NCBI-ProteinID: AEX67955
Position
complement(1837657..1840557)
AA seq 966 aa
MAEKSKKTTKNQAVSSPIGQAIAALDRSIIGEKIRVHILAKQLGVASKELIAQLATMGLK
KVAQSTLSNQEANQLLDSFVPAQPEVDEKLRHRVEKNVENEIAQIEAKVNRDLEEAAANE
HRVVDSEEEKLRYRVEKNVDNEVEQIKRQVERELSQRSVEVEDLHEVIEFEKEAEPLEDV
EPESAPAPASVSYSVPLFIAPTVVDKELEEVEDDEDGEDDTDDDSTHAKRRRRGRRGAGR
GKGADDSAEIVETEDADEHESEEITEPVGIKGSTRLEAQRRRRAELREESKKKRHIVSEA
EFLARRESVTRTMVVRERDRVDHHGMVTQVGVLEDGMLVEHFVTSEAQASMIGNIYLGRV
QNVLPSMEAAFIDIGKGRNGVLYAGEVDWRAAGLGGRGRRIEQALKSGDQVLVQVAKDPI
GHKGARLTTQISFAGRYLVYVPGGRTAGISRKLPAPERKRLKEILKEVVPHDGGAIIRTA
AENVSAEAIGADVKRLHKLWDKIQQRTEEEKASKGAKPVTMYEEPNMLVKVVRDLFNEDF
TSLVIDGDRAWNTVHAYVQSVAPDLLDRLVRFDRSEHEGRDAFEVHRVNEQIKKALSRKV
WLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEETVTKNNLEAAEEIVRQMRLRDLGGM
IVVDFIDMVLPENQDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLLETFAT
ECPHCEGRGVIIHDDPVEQRDADVAMEKSHRARNERKKNKNHTPSEHPAAVAMHEEKKKV
SIEDLVAAVVIEDDPQPEPEVAPAPADDDVMNIVSAALDRAYEEDPDEPSGSDYLPLEEK
PQTYAEAVEEFERSPRRKRKTRGNSVSDVPPRKADFEKPEPEVVVEKVSSRGRRRAVRRT
VVEATPEVVAPTETVESSRGRRRAVRKKMSAQPVQTEPVVEDKHEVSASSQGGRGRRRAS
RRAPRR
NT seq 2901 nt   +upstreamnt  +downstreamnt
gtggctgaaaagtccaagaaaacaaccaaaaaccaagctgtatcttcgccgattggccaa
gcgatagctgcattggatcgctcgattatcggcgaaaaaatccgtgtgcacattctggcc
aagcagctaggtgttgcatctaaagagctcatcgcgcagttggcaaccatgggactgaaa
aaagtagcgcagtcgacgttgagtaaccaagaagctaatcagctgctcgactctttcgtt
ccagcgcaaccggaagtagatgagaagttgcgccaccgcgtggaaaagaacgtggaaaat
gagattgcgcagatcgaagccaaggtcaaccgcgacttggaagaagcggcggcgaacgag
catcgtgtagtggattctgaggaagagaagctgcgctaccgcgtggaaaagaacgtggat
aacgaggtcgagcagattaagcggcaggttgagcgcgaactaagtcagcgttcggtggag
gtagaggacctccacgaggttatcgagttcgaaaaagaagcggagccgctcgaggacgtt
gagccggaatctgcacctgcgccggcgagcgtgtcctatagcgttccgctgtttatcgcg
cccacggtcgttgataaagagctcgaagaagtagaagacgacgaggatggggaagacgac
actgacgacgactccactcacgctaagcgtcgtcgtcgcggtcgtcgtggcgctggtcgt
ggcaagggtgcagatgactcagctgagattgttgaaacagaagatgctgacgagcacgaa
tccgaagaaatcaccgagccagtaggtattaaaggctccactcgtttggaagcacagcgt
cgtcgccgcgcggagctgcgtgaagagtcgaaaaagaagcgccacatcgtttctgaggcc
gagttcctagcacgtcgcgaatctgtcacgcgcacgatggtggtacgtgagcgcgatcgt
gtagaccaccatggcatggtgacccaagttggtgtgcttgaagatggaatgctcgttgag
cactttgttaccagtgaggcccaggcctcgatgatcggcaacatctatcttggtcgcgtg
caaaacgtcctgcccagcatggaagctgccttcatcgacatcggaaagggtcgcaacggt
gtgctttacgcgggcgaggtggactggcgtgccgcaggccttggtgggcgaggccgtcgt
atcgagcaagccctgaaatccggtgaccaggtgctcgtccaagttgctaaagatcctatt
ggacacaagggtgctcgccttactacgcagatttctttcgcgggacgctacttggtgtac
gttcctggtggacgcactgcagggatttcccgcaagcttccagctcctgagcgtaagcgt
ttgaaggaaatcctcaaggaggtcgtgcctcacgacggcggtgccatcatccgaactgcc
gccgaaaacgtttctgcagaggcgatcggtgcagacgtcaaacgcttgcacaagctctgg
gataagatccagcagcgcaccgaggaagaaaaagcttccaagggtgccaagccggtgacc
atgtatgaagagcccaacatgctcgtcaaagtggtgcgtgatctcttcaatgaagatttc
acctccttggttatcgatggtgatcgtgcatggaacacggttcacgcgtatgtgcagtcg
gttgccccagacttgttggatcgcttggtgcgttttgaccgcagcgagcatgagggacgt
gacgccttcgaggtgcaccgcgtcaacgagcagattaaaaaggcactgtcacgaaaggtt
tggctgccatctggtggcaccttggtgatcgaccgcaccgaagccatgacggtgatcgac
gtgaacacaggcaagttcaccggtgcgggcggaaacctcgaagagaccgtgaccaagaac
aacctggaggccgcagaagagatcgttcgccagatgcgtctgcgcgacctcggcggcatg
atcgtggttgatttcattgacatggttttgccggaaaatcaggacttggtgctgcgtcgc
ctcaccgaagcgctaggacgcgaccggacgcgccaccaagtatccgaggtgacgtcgtta
ggcctcgtccagatgacccgcaaacgcttgggcactgggttgcttgaaacgtttgctacc
gaatgcccacactgtgaaggccgtggtgtaatcatccacgacgatcccgtcgagcagcgc
gatgccgatgtggcaatggaaaagtctcatcgtgctcgcaatgaacgcaagaagaacaag
aaccacaccccatccgagcatccggcggccgttgccatgcacgaggaaaagaagaaggtc
agtatcgaagacctcgtcgccgcagtggtaattgaggacgatccacagccagagcctgaa
gtggcaccagctcctgccgacgacgacgtgatgaacatcgttagcgctgcgctggatcgt
gcttatgaggaggatcctgacgagccttccggatcggactatttgccgctagaagaaaag
ccacagacttatgccgaggcagtggaagagtttgagcgttctccacgccgtaagcgtaag
acccgtggcaattccgtctccgatgtgccgccgcgcaaggcagattttgaaaagccagaa
cctgaggttgtcgtggagaaagtaagctcgcgtggtcgtcgtcgagctgtgcgacgcacg
gtagtggaggctacccccgaggtggtagcgccaacggaaactgttgaatcctcccgtggt
cgccgtcgcgctgtgcgtaagaaaatgtctgctcagccagtgcaaacggagccggtagtg
gaagacaagcatgaggtttctgcatcatctcagggtggtcggggacgccgtcgtgcttca
cgacgcgcaccgcgccgttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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