KEGG T03347: LH89

Dickeya fangzhongdai ND14b: LH89_01095

Entry

LH89_01095        CDS       T03347

Name

(GenBank) exodeoxyribonuclease V subunit beta

K03582

exodeoxyribonuclease V beta subunit [EC:3.1.11.5]

Organism

ced Dickeya fangzhongdai ND14b

Pathway

ced03440

Homologous recombination

Brite

KEGG Orthology (KO) [BR:ced00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    LH89_01095
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ced03400]
    LH89_01095
Enzymes [BR:ced01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     LH89_01095
DNA repair and recombination proteins [BR:ced03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     LH89_01095

SSDB

Motif

Pfam:

UvrD-helicase UvrD_C AAA_19 PDDEXK_1 UvrD_C_2 AAA_22 AAA_11 AAA_25 DUF3799

Other DBs

NCBI-ProteinID:

AIR67867

Position

259879..263553

AA seq 1224 aa
MTARALPSVLDVLRFPLSGSRLIEASAGTGKTFTIAMLYVRLVLGHGGEQAFSRPLNPPD
ILVVTFTDAATRELRDRIRARLAQAAAYFQPDGKDEAVDPLLHELRADYPPEQWPDCARK
LQLAAEWMDEAAVSTIHSWCNRMLGEHAFDSGSLFNQTLETDQSELLLEVVRDYWRTFFF
PLDARDVLELRDSWPSPESFYRSVTPLLEYADDIGIDDLPAQIFSAVREEKTRRLAALKA
PWPQWCDELRDLLNAAVAQKKADGRKLQARYFDPWLDKLQHWAASDETTLDIGTGWTRLT
PQGLRECWKIPEEAPQHPALTAMETLQQQLDALPEPRSQLLRHACRWISQRFQHEQESRA
QMGFQDLLTRLDAALRGDNGERLAQRIRRQFPVAMIDEFQDTDPLQYRIFDTLYRVADND
SQQGLILIGDPKQAIYAFRGADIYTYLRARRDTDGRHYTLGTNFRSTQAMVGAVNQVFMQ
AENRVDGAGAFLFRQSDGGNPVPFLPVQANGRDEAWVLEGADAAALTCWTPATDEPLSSA
EYRQRMAAGCAREMVRLLQLGGQGRAGFAVPGQPLRPVRPGDMAVLVNTGREAMAVRAQL
SARGVRSVYLSDRESVFDSPQAGELHCWLAACADPENDRLLRAALATPSLGLSWQALDRL
NHDEQEWERRVMQFVRYQSCWRQQGVLPMLRRLMWEFDVPRRLLAADNARALTDVLHLSE
LLQQASVHLDGEHALIRYLAEQCQADNPGGDTLKLRLESDADLVKVVTVHKSKGLEYPLV
FLPFACAFRAVSQRDVPLKFHDDDGQPRLELIASDEAVRRADHERLGEDLRKFYVALTRA
RYAMWLGMAPLKELEKSAPGYLLGAGEPLDPAQLAQQLSAWCGADSQITPLPETDEDIYR
PEQDTSALGQEPPLPNMRSHRWRITSYSGLQLAPEGHYREYREPAAGDVPEVQSAKQETF
SEPQATAERLPPLPTGHDMYSFPRGAAPGSFLHGLLEWAGKEGFAALAADRSRVEDQVAR
RCNRQGWTQWIPMLTDWLMALLNQPLALPTQPGSAVSLAGLTQYQVEMEFWFALSQVDTQ
VLDQQVRAATLAGEPRAMLMREQLNGMLKGFIDLVFEHQGRYYVLDYKSNWLGADAADYD
PPRMARAMLDHRYDLQLALYLFALHRLLKSRLPDYDYDRHVGGALYLFLRGSQAPGGGVC
AQRPDKALIDALESLFSGETEATA

NT seq 3675 nt +upstreamnt +downstreamnt
atgacggcgcgtgcgttaccttctgtgctggatgtgctgcgctttccgctttccggcagc
cgcctgatcgaagccagcgccggcaccggcaaaaccttcaccatcgccatgctgtatgtg
cggctggtgctggggcatggcggcgaacaagcgttttcccgcccgctcaacccgccggac
attctggtggtgacctttaccgatgccgccacccgcgagctgcgtgaccgtattcgcgcc
cggctggcgcaggcggccgcttactttcagccggatggcaaggatgaggcggtcgatccg
ctgctgcatgaactgcgcgccgactacccgccggaacaatggccggactgcgcgcgcaaa
ttgcaactggccgccgaatggatggatgaggcggcggtgtccaccatccacagttggtgt
aaccggatgctgggcgaacacgcttttgacagcggcagcctgtttaaccagacgctggaa
accgatcagagcgaattgctgctggaggtggtgcgcgattactggcggacgttctttttc
ccgcttgatgcccgcgatgtgctggaactgcgcgatagctggccgtcgccggaaagcttt
tatcgcagcgtgacgccgttgctggaatatgccgacgacatcggcatcgatgacctgccc
gcgcagattttcagcgcggtccgcgaagagaaaacgcgccgactggcggcgctaaaagcg
ccctggccgcagtggtgcgatgaattgcgcgacctgctgaacgcggcggtggcacagaaa
aaggcggacggtcgcaagctgcaggcccgctatttcgacccgtggctggacaaactgcaa
cactgggccgccagcgacgagacgacgctggatatcggcaccggctggacgcggctaacc
ccgcaagggctgcgggagtgctggaaaatccccgaagaggcgccgcaacatccggcattg
accgcgatggagacgctgcaacagcagttagacgcgctgccggaaccgcgtagtcagtta
ctgagacacgcctgtcgctggataagccagcgattccagcatgagcaggagagccgggcg
caaatggggtttcaggacctgctgacccggttggatgccgcgttgcgcggcgacaacggc
gagcggctggcgcagcgtattcgccgtcagttcccggtggcgatgatcgacgaatttcag
gacaccgacccgctgcaataccgtattttcgataccttgtaccgggtggcggacaacgac
tcgcagcaggggctgatcctgatcggcgacccgaaacaggcgatttacgcgtttcgcggc
gccgatatctatacctatttgcgcgctcgccgcgataccgacgggcggcattacacgctg
ggtacgaatttccgctctactcaggcgatggtcggcgccgttaatcaggtgtttatgcag
gcggaaaaccgtgtcgacggcgcgggcgcgtttctgtttcggcaaagcgacggcggcaat
ccggtgccgtttttgccggtacaggccaacgggcgcgacgaggcgtgggtgctggagggt
gctgacgccgccgcgctgacctgctggacgccggcgacggacgagccgctgtcgtcggcg
gaataccgccagcgtatggctgccggctgcgcccgcgaaatggtgcggttgctgcagctc
ggcgggcaaggtcgggccggttttgccgtaccggggcagccgctgcgcccggtcagaccg
ggggacatggcggtgctggtcaataccgggcgcgaagcgatggcggtgcgcgcgcagttg
tccgctcgcggcgtgcgcagcgtgtatctgtcggaccgggagtcggtcttcgacagcccg
caggccggcgagctgcactgctggctggcggcctgcgccgatccggagaacgatcggctg
ttgcgcgccgcgctggcgaccccctcgctggggctgagctggcaggcgcttgaccgcctt
aaccacgacgagcaggagtgggaacgccgggtaatgcagtttgtccgttaccagagctgc
tggcgacagcagggcgtattgccgatgctgcggcggctaatgtgggaattcgatgtgccg
cgccggttgctggccgccgataacgcccgcgcgctgaccgatgtgctgcacctgtcggag
ttgctgcaacaggccagcgtacatctggacggcgagcacgcgctgatccgctatctggcg
gagcagtgccaggcggataatcccggcggcgacaccctgaaactgcggctggaaagcgat
gccgatctggtgaaggtggttaccgtccacaagtccaaagggctggagtatccgctggtg
tttctgccgtttgcctgcgcgtttcgtgccgtcagccagcgggatgtgccgctgaaattt
catgatgatgacgggcagccgcggcttgaactgatcgccagcgacgaggcggtgcgacgc
gccgaccatgagcggctgggcgaggacctgcgtaaattttatgtggcgctgacccgcgcc
cgctacgccatgtggctgggcatggcgccgttgaaagagctggaaaaaagcgcgcccggt
tacctgctcggcgccggtgaaccgttagacccggcgcaactggcgcaacagttgtcggcc
tggtgcggcgcggacagccagattacgccgttgccggaaacggacgaggacatttaccgc
cctgaacaggatacgtcggcgctggggcaggagccgccgttgccgaatatgcgcagccac
cgctggcgcattaccagctattccgggttgcaactggcgccggaggggcattaccgcgaa
tatcgtgagcctgctgcgggcgatgtgcccgaagtgcagagcgcgaagcaggaaaccttt
agcgaaccgcaggcaacagcggagcgtctgccgccgttgccgaccggccacgatatgtac
agttttccacgcggggcggcgccgggcagctttctgcacggcttgctggagtgggccgga
aaagagggctttgccgcgctggcggcggatcgatcccgggtggaggatcaggtggcgcgg
cgctgtaaccggcaaggctggacacagtggataccgatgcttaccgattggttgatggcg
ctgctcaatcagccgctggcgctgccgacgcagcccggcagcgcggtctcactggctggg
ttgacgcagtatcaggtggaaatggagttctggtttgcgctcagtcaggtcgacacgcaa
gtcttggatcaacaggtcagggccgccacgctggcgggcgaaccgcgagcgatgctgatg
cgagaacagcttaacggcatgctgaaagggtttatcgatttggtatttgaacatcagggg
cgctactacgtgctggactacaaatccaactggctgggggcggatgccgccgactatgac
ccaccgcgtatggcgcgcgccatgctggatcaccgttacgatctgcaactggcgttgtat
ctgtttgcgttgcaccgcttgctgaagtcccgcctgccggattacgactacgaccgccac
gtcggcggcgcgttatacctgtttttgcgcggcagtcaggcgccgggcggcggcgtctgc
gcccaacggccggacaaggcgctgattgacgcgctggagagcctgtttagcggcgaaacg
gaggcgacggcatga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

Download RDF

DBGET integrated database retrieval system