KEGG   Dickeya fangzhongdai ND14b: LH89_01675
Entry
LH89_01675        CDS       T03347                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
ced  Dickeya fangzhongdai ND14b
Brite
KEGG Orthology (KO) [BR:ced00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ced03032]
    LH89_01675
   03400 DNA repair and recombination proteins [BR:ced03400]
    LH89_01675
Enzymes [BR:ced01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     LH89_01675
DNA replication proteins [BR:ced03032]
 Prokaryotic type
  DNA Topoisomerases
   LH89_01675
DNA repair and recombination proteins [BR:ced03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      LH89_01675
SSDB
Motif
Pfam: Topoisom_bac Topo_Zn_Ribbon TOP1_ZnF Toprim zf-C4_Topoisom Zn_ribbon_recom Toprim_2
Other DBs
NCBI-ProteinID: AIR67976
Position
complement(392426..395029)
AA seq 867 aa
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHVRDLPTSGSGSASKKSAEANGEKAKKA
VKKDEKTALVNRMGVDPYRGWQAQYEILPGKEKVVSELKTLAQNAEHVYLATDLDREGEA
IAWHLREIIGGDDKRFSRVVFNEITKNAIRQAFDNPGELNINRVNAQQARRFMDRVVGYM
VSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWELHADLLANPEIALQMQV
THHNGKPFRPVNQAQTQAAVSLLEKASYVVAEREDKPTSSKPGAPFITSTLQQAASTRLG
FGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDALAMARDYIHDEFGKRYLPEAPNLYTSK
ENSQEAHEAIRPSDVKVLADQLKDMEADAQKLYQLIWRQFVACQMMPAQYDSTTLVVSAG
DYQLRAKGRTLRFDGWTKVMPALRKSDEDRTLPAVDVGQSLSLEKLLPSQHFTKPPARYS
EASLVKELEKRGIGRPSTYAAIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEDNFRELM
NYDFTARMENSLDLVANSQAEWKAVLDEFFAEFSKQLETAELEPDEGGMKPNQMVLTSID
CPTCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLIPEAEVLNVLEGDEAETNALRA
RRRCSKCGTAMDSYLIDNQRKLHVCGNNPSCDGYEIEQGEFRLKGYDGPVVECEKCGSEM
HLKMGRFGKYMACTSESCGNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAG
VFLAANTFPKSRETRAPLVEELVRFRDRLPEKLRYLAEAPVTDPEGNKTLVRFSRKTKQQ
YVSSEKEGKATGWSAFYVDGKWVESSR
NT seq 2604 nt   +upstreamnt  +downstreamnt
atgggtaaagctctcgttatcgtcgagtccccggcaaaagccaaaacgattaataagtac
cttggcaatgattacgtggtgaaatccagcgtggggcatgtacgcgacttgccgaccagc
ggctccggttcggcgagcaagaaaagcgctgaggccaacggggagaaagccaaaaaagca
gtcaagaaagatgaaaaaaccgcgctggtcaaccgcatgggggtggatccctatcgcggc
tggcaggctcagtatgagattctgcccggcaaggaaaaagtcgtatcggaactgaaaacg
ctggcgcagaacgccgagcacgtctatctcgcaaccgaccttgaccgcgaaggggaagcc
attgcctggcacctgcgggaaatcatcggtggcgacgataagcgtttcagccgcgtggtg
ttcaacgagatcaccaaaaacgccattcgtcaggcgttcgacaatccgggcgagctgaat
atcaaccgtgtcaacgcccagcaggcccgccgtttcatggaccgcgtggtgggttacatg
gtatcgccgctgctgtggaaaaagattgcccgtgggctgtccgccggtcgcgtacagtca
gtggcggtacgtctggtggtggagcgcgagcgagaaatcaaagcgtttgtgccggaagaa
tactgggaattgcacgccgatttgctggcgaacccggaaatcgcgctgcagatgcaggtg
acacaccacaacggcaaaccgttccggccggtgaatcaggctcagacgcaagcggcggtc
agcctgctggaaaaagccagctatgtggtggctgaacgggaagacaaaccaaccagcagc
aaaccgggcgcgccgttcattacctctacgctgcagcaggccgccagcacccgtctgggc
ttcggcgtgaaaaagaccatgatgatggcgcagcggttgtatgaagccggccatatcact
tacatgcgtaccgactccaccaacctgagtcaggatgcgctggcgatggcgcgtgattat
atccatgacgaatttggcaaacgctatctgccggaagcgcccaacctttacaccagcaag
gaaaactcgcaggaagcgcacgaagccattcgtccttccgatgtgaaggtgttggccgac
cagctcaaagacatggaagcggatgcgcaaaagttgtatcagctgatttggcggcagttt
gtggcctgtcagatgatgccggctcaatatgattccaccacgctggtggtcagcgccggc
gactatcagctgcgtgccaaagggcgtactctgcgcttcgacggttggactaaagtgatg
ccggcgctgcgcaagagcgacgaagaccgtacgttgccggccgtcgacgtggggcaatcc
ctgtcgctggaaaaactgttgccaagccagcactttaccaaaccgccggcgcgttacagc
gaagcatcgctggtcaaggagctggaaaagcgtggtatcggccgtccttccacgtatgcc
gccatcatctccaccattcaggatcggggttatgtgcgggtggaaaaccgccgtttctac
gccgagaagatgggggagatcgtgaccgatcggctggaggataacttccgcgagctgatg
aactacgattttaccgcccgtatggaaaatagcctcgacctggtggcgaacagccaggcc
gagtggaaagcggtgctggatgaattcttcgccgaattcagcaaacagctggaaaccgcc
gagctggagccggacgaaggcggcatgaagccgaaccagatggtgctgaccagcattgat
tgcccgacctgcggccgaaaaatggggatccgtaccgccagcaccggggtgttcctcggc
tgttccggttatgcgctgccgcccaaagagcgctgcaaaaccaccatcaacctgattccg
gaagcggaagtgttgaatgtgctggagggcgatgaggcggaaaccaatgcgttgcgcgcc
cgtcgccgttgctcgaaatgcggtacggcgatggacagctacctgatcgacaatcagcgt
aaactgcatgtgtgcggcaacaacccgtcctgcgatggctatgagatcgaacaaggcgag
ttccgcctcaaaggctatgacggcccggtggtggaatgcgagaagtgcggttcggaaatg
cacctgaaaatggggcgtttcggcaaatatatggcctgtaccagcgaaagctgcggcaat
acccgcaaaattctgcgtaacggggaagtggcgccgccgaaagaagatccggtgccgttg
ccggagctgccatgcgagaaatccgacgcctattttgtgctgcgcgatggtgccgccggc
gtgttcctggcggccaataccttcccgaaatcgcgtgaaacccgcgcgccgttggtggaa
gaactggttcgtttccgcgatcgcttgccagagaaattacgctatctggccgaggcgccg
gtgaccgacccggaaggtaacaaaacgctggtgcggttcagccgcaaaaccaaacagcag
tatgtttcctctgaaaaagagggcaaagctaccggatggtcggcattttatgtggacggc
aaatgggtggaaagcagccgctaa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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