KEGG   Caenorhabditis elegans (nematode): CELE_C18E3.5
Entry
CELE_C18E3.5      CDS       T00019                                 
Symbol
snrp-40.2
Name
(RefSeq) WD_REPEATS_REGION domain-containing protein
  KO
K12857  Prp8 binding protein
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CELE_C18E3.5 (snrp-40.2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cel03041]
    CELE_C18E3.5 (snrp-40.2)
Spliceosome [BR:cel03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    CELE_C18E3.5 (snrp-40.2)
 Complex C
   U5 SnRNP specific factors
    CELE_C18E3.5 (snrp-40.2)
SSDB
Motif
Pfam: WD40 NBCH_WD40 ANAPC4_WD40 WD40_like Nup160 PROPPIN Ge1_WD40 WDR54
Other DBs
NCBI-GeneID: 172015
NCBI-ProteinID: NP_491325
WormBase: WBGene00015974
Ensembl: WBGene00015974
UniProt: O02097
Position
I:4193241..4203303
AA seq 331 aa
MAMVIPARNQMASQFLELPKRTSSLMAPTMVLQGHGGEIYTSQFSSDGSFLASAGYDQQI
FLWNVFGECENFAVLKGHKGAIMEVKFNADSSHLVSAGTDKTVRVWDMETGSCIRNFKSH
TDIVNSVDVNRRGPQMICSASDDGTVMVHDMRSKEAAKKFICKYQQTAVTFNDAADNVIC
GGIDNQIKVWDMLRNDVRYVLSGHRDTITSLSVSHNGNFLLSNSMDCSLMSWDIRPFVPA
QRLVARYQGASHNFEKNLLKCGWSPRDNYITAGSADRFVYVWNAKSRACVYKLPGHLGSV
NCTALHPTQQILLSAGSDKTIFLGELDLEDY
NT seq 996 nt   +upstreamnt  +downstreamnt
atggcgatggtaatcccagctcgcaatcaaatggcttcacaatttttagagttacccaaa
aggacttcaagcttgatggctccaacaatggttcttcaaggacacggaggagagatttac
acgtcccaattcagttcggatggaagttttcttgctagtgccggatatgatcaacagatc
ttcctgtggaatgtgtttggcgaatgtgagaattttgcagttctcaaagggcacaaagga
gccattatggaagtgaaattcaacgcggattcgagtcatcttgtatctgctggaaccgat
aaaaccgttcgtgtctgggatatggaaaccggttcgtgtattcgaaacttcaaatctcat
accgatattgtcaattcggttgatgtgaatcgtcgaggtcctcaaatgatttgctcagcg
tcggatgatggaactgtcatggttcacgatatgcggagcaaggaagcggcgaaaaagttt
atctgcaaataccaacagacggctgtcacgttcaacgatgccgcggataatgttatttgt
ggaggaattgacaatcagattaaggtctgggacatgctccgaaatgacgtcagatatgtg
ctctccggacaccgcgatacgatcacttctctttctgtcagtcataatggaaactttttg
ctttccaactcgatggattgttctttgatgagttgggatattcgaccatttgttcctgct
cagaggctcgttgccagatatcaaggagcttcgcataattttgaaaagaatcttttgaaa
tgcggctggtctccacgcgacaactacatcaccgccggctctgcggatcgtttcgtctat
gtttggaatgcaaaatcgcgtgcatgtgtctataaacttcctggacatcttggttccgtc
aactgcactgctcttcatccaactcaacagattcttctctctgctggaagcgacaagacc
attttcctcggagaactcgacctggaggattattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (37)   

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