KEGG   Caenorhabditis elegans (nematode): CELE_F01G12.5
Entry
CELE_F01G12.5     CDS       T00019                                 
Symbol
let-2
Name
(RefSeq) Collagen alpha-2(IV) chain
  KO
K06237  collagen type IV alpha
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel04512  ECM-receptor interaction
cel04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cel00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    CELE_F01G12.5 (let-2)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    CELE_F01G12.5 (let-2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cel04147]
    CELE_F01G12.5 (let-2)
   00536 Glycosaminoglycan binding proteins [BR:cel00536]
    CELE_F01G12.5 (let-2)
Exosome [BR:cel04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   CELE_F01G12.5 (let-2)
Glycosaminoglycan binding proteins [BR:cel00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   CELE_F01G12.5 (let-2)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 181708
NCBI-ProteinID: NP_510663
WormBase: WBGene00002280
Ensembl: WBGene00002280
UniProt: P17140
Position
X:complement(<16380597..>16389340)
AA seq 1759 aa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NT seq 5280 nt   +upstreamnt  +downstreamnt
atgaagcaacgagcggctctcgggcccgtgttgcgactggccatattggccttactagct
gtgagctatgttcaatcgcaagctacatgcagagattgctctaaccgaggatgtttctgc
gtcggagaaaaaggatctatgggagcaccaggaccacaaggtccacctggaacccaagga
atccgtggattcccaggaccagaaggactcgctggaccaaaaggactgaaaggagctcaa
ggaccccctggaccagttggaatcaagggagatcgtggagccgttggagtacctggattc
ccaggaaatgacggtggaaacggacgaccaggagagccaggaccaccaggagccccagga
tgggatggttgcaacggaactgacggagctccaggaatcccaggacggccaggaccacca
ggaatgccaggattccccggaccaccaggaatggacggtttgaagggagagccagctatc
ggatatgctggtgctccaggagagaagggagatggcggtatgccaggaatgcccggactt
ccaggaccatccggtcgtgatggatacccaggagaaaagggagaccgaggagatactgga
aatgctggaccacgtggaccacctggagaggctggatccccaggaaacccaggaatcgga
agcattggaccaaaaggagatcctggagacattggtgcgatgggaccggccggtccgcca
ggcccaatcgcctccaccatgtccaagggaaccattatcggtcctaagggagacctagga
gagaagggagagaagggagagccaggagagggaggtcaacgcggttacccaggaaatgga
ggactctcaggacagccaggactcccaggaatgaagggagaaaagggattgtctggacca
gctggaccaagaggaaaggaaggtcgcccaggaaacgctggaccaccaggattcaaggga
gatcgtggtcttgacggacttggcggaatcccaggacttccaggccaaaagggagaagct
ggatacccaggaagagatgggccaaagggtaactccggaccaccaggaccaccaggaggt
ggtactttcaatgacggagctccaggaccaccaggattgccaggacgaccaggaaaccca
ggaccaccgggaactgatggctacccaggagccccagggccagctggaccaatcggaaac
acaggagggccaggtcttccaggttacccaggaaatgaaggactcccaggaccaaaggga
gataagggagatggcggtattccaggagcgccaggagtctctggaccatctggaattcca
ggacttccaggaccaaagggcgaaccaggatatcgtggaaccccaggacaaagcatccca
ggacttccaggaaaggacggaaagccaggactcgatggagccccaggccgcaagggagaa
aatggattgccaggagttcgtggaccaccaggagattctcttaatggacttccaggagca
ccaggacaacgcggagcaccaggaccaaacggatatgacggacgtgacggagttaacggt
cttccgggagccccaggaacaaagggagacagaggaggtacctgctcggcttgtgctcca
ggaaccaagggagaaaagggattgccaggatattctggtcagccaggaccacaaggagac
cgcggtctcccaggtatgccaggaccagtcggagacgctggagatgatggtcttccggga
ccagcaggtcgcccaggatctccaggaccaccaggacaagacggtttcccaggactccca
ggacaaaagggagaaccaactcagctaacccttagaccaggaccaccaggttatccagga
ttgaagggagaaaacggattcccaggacaaccaggagttgatggactcccaggaccatca
gggccagtcggaccaccaggagcgccaggatacccaggagagaagggagacgccggtctt
ccaggactttcaggaaagccaggacaggacggacttccaggactcccaggaaataaggga
gaagccggatacggacagccaggtcaaccaggattcccaggagctaaaggagatggcggt
cttccaggactgccaggaactccaggtctccaaggaatgccaggagagccagctccagaa
aaccaagtgaacccagctccaccaggtcaaccaggactcccaggacttccaggaaccaag
ggagaaggaggatacccaggtagaccaggagaagtcggtcaaccaggattcccaggactg
ccaggaatgaagggagactctggcctcccaggaccaccaggactcccaggacacccaggt
gttccaggagacaagggattcggaggtgtcccaggattaccaggaattccaggaccaaag
ggagatgtcggaaacccaggactcccaggtcttaacggacaaaagggagaaccaggagtt
ggagtcccaggacaaccaggatcaccaggattcccaggacttaagggagacgccggtctt
ccaggtcttccaggaaccccaggactcgagggtcaacgtggattcccaggagccccagga
ctcaagggaggagacggtcttccaggactgtctggtcagccaggatacccaggagaaaag
ggagacgccggtttgccaggagtaccagggcgtgaaggatcgccaggattcccaggtcaa
gatggacttccaggagtgccaggaatgaagggagaagacggtcttccaggactcccagga
gttactggactcaagggagatctcggagcaccaggacaatccggagcaccaggactccca
ggagcaccaggatacccaggaatgaagggaaatgcgggtatcccaggagtgccaggattc
aagggagacggaggactcccaggactgccaggacttaacggaccaaagggagaaccagga
gtaccaggaatgccaggaaccccaggaatgaagggtaacggtggtctgccaggattgcca
ggacgtgatggactttccggagtaccaggaatgaagggagatcgtggtttcaacggactt
ccaggagagaagggagaagctggaccagctgctcgtgacggacaaaagggagatgccggt
cttccaggacagccaggtcttcgtggaccacaaggaccatctggacttccaggtgtccca
ggattcaagggagagactggacttccaggatatggacaaccaggtcaaccaggagagaag
ggacttcctggcattccaggaaaggctggacgtcaaggagccccagggtcaccaggacaa
gacggactcccaggattcccaggaatgaagggagaatctggatacccaggacaagacggc
cttccagggcgtgatggcctcccaggagtcccaggacaaaagggagatcttggacagtct
ggacagccaggactctccggggccccaggactcgacggtcaaccaggagtaccaggaatc
cgtggagacaagggacaaggaggactacccggaatcccaggagatcgtggaatggatggt
tatccaggacaaaagggagagaacggttacccaggtcagccaggtcttccaggacttggt
ggagagaaaggattcgctggaaccccaggtttcccaggacttaagggatccccaggatac
ccaggacaagacggacttccaggaatccctggattgaagggagactcaggattcccagga
cagccaggacaagaaggactcccaggactttccggagagaagggaatgggtggactccca
ggaatgccaggacaaccaggtcaatctattgctggaccagttggaccaccaggtgcccca
ggacttcaaggaaaagacggcttcccaggccttccaggacaaaagggagaatccggtctt
tcaggccttccaggagcccctggattgaagggagaatccggcatgccaggattcccagga
gctaagggagatctaggagccaatggaattccaggaaagcgcggagaagacggtctacca
ggagtaccaggaagagatggacaaccaggaatcccaggattgaagggagaagttggaggt
gctggtcttccaggacaaccaggcttcccaggtatcccaggacttaagggagaaggaggc
cttccaggtttcccaggagcaaagggagaagctggattcccaggtaccccaggagtgcca
ggatacgccggagagaagggagacggaggtcttccaggtcttccaggaagagacggactc
ccaggagctgatggaccagtgggaccaccaggaccatcaggaccacaaaacctcgttgag
ccgggagagaagggacttccaggtcttccaggagccccaggacttcgtggagagaaggga
atgccagggctcgatggaccaccaggaaacgatggaccaccaggtcttccaggacaacgt
ggaaacgacggatacccaggagccccaggattatcaggagagaagggaatgggaggtctt
ccaggtttcccaggacttgacggacaaccaggaggcccaggagccccaggattgccagga
gcaccaggagctgcaggaccagcttacagagacggattcgttctcgtcaagcactcccaa
accaccgaagtaccaagatgcccagagggtcagaccaagctgtgggacggatattccttg
ttgtacattgaaggaaacgagaaatcccataaccaagacctcggacacgctggatcatgc
ctccaaagattctccaccatgccattcctgttctgcgacttcaacaacgtctgcaactac
gcctccagaaacgacaagtcttactggctctcaacatctgaagctatcccaatgatgcca
gtcaacgagcgtgaaatcgagccatacatctcgcgctgcgctgtgtgcgaagccccagcc
aacacgatcgctgttcactcccagaccatccaaattccaaactgcccagcaggatggagc
agcttgtggatcggatactcgttcgccatgcacaccggagccggagccgagggaggtggt
caatcactctcctcaccaggatcctgcttggaagacttccgtgccactccattcatcgag
tgcaacggtgcccgcggatcttgccactactttgccaacaagttctcattctggcttacc
accatcgacaatgactcagaattcaaggtgccagaaagtcagacactcaagtcaggaaat
cttcgtacccgcgtctcaagatgccaagtttgcgtcaagtccaccgacggacgtcattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (246)   
   KEGG ORTHOLOGY (1)   
   RefGene (240)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (260)   

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