KEGG   Caenorhabditis elegans (nematode): CELE_F09D1.1
Entry
CELE_F09D1.1      CDS       T00019                                 
Symbol
usp-39
Name
(RefSeq) ubiquitinyl hydrolase 1
  KO
K12847  U4/U6.U5 tri-snRNP-associated protein 2
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CELE_F09D1.1 (usp-39)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cel03041]
    CELE_F09D1.1 (usp-39)
Spliceosome [BR:cel03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP specific factors
    CELE_F09D1.1 (usp-39)
SSDB
Motif
Pfam: UCH zf-UBP UCH_1 zf-UBP_var
Other DBs
NCBI-GeneID: 173606
NCBI-ProteinID: NP_494298
WormBase: WBGene00017280
Ensembl: WBGene00017280
UniProt: O44787
Position
II:2565275..2575930
AA seq 602 aa
MTNEEPKSPEKVERRRSTQEDSEKDKKRSRDDRKTEKRTHDRDRKRNRSRSRSRSRSPKR
SRRDKKEEKQEQEEEDGEIRDTTPPAPEKPRQLTARELERQRIIEEELKSGKHDEHDDDP
VWSMKKAQAEKKSRMCPYLDTIDRSVLDFDFEKQCSVSLSHQNVYACMVCGKYFQGRGTN
THAYTHALETDHHVFLNLQTLKFYCLPDNYEVIDPSLEDIKYVLKPTYTKEMIASIDKQS
KMVRAYDDSTYFPGVVGLNNIKANDYCNAILQALSAVRPLRNWFLKESNYTSIKRPPGDK
LTLLPQRFGELIRKLWNPRALRTHVSPHEMLQAVVVCSNKKFQFIKQNDAADFMLFLLTT
LHSALNGTDKKPSIISKTFRGRMRQYSRRVIPAEDTDEEKYMKLRMPEYQEKVIESPFLY
LTLDLPSAPLYRDVQLQNIIPQVPLSTLLEKFDGKTEKEYPTYNDNNIMKRFELLQLPDF
LIITYKRFQKNQWFVEKNPTIVNFPIANVDFYDCLAKDARANHKYTTYDLVANVVHEGTF
KDGNYRIQIVHEGSGKWFELEDLHVKDLLPQMIVLAESYIQIWRLNKEQTRDERAEGEPM
QN
NT seq 1809 nt   +upstreamnt  +downstreamnt
atgacaaacgaagagccaaaatctcccgaaaaggtggaacgccggcggtcaacgcaggaa
gattcggaaaaagacaagaaacgttcgagagacgatagaaaaaccgagaaaaggactcac
gatagggataggaagaggaataggagccgatcgagatctagatcaaggtccccaaagcgc
tcgagacgggataaaaaagaggaaaagcaagagcaagaggaagaggatggcgagatccgc
gatacaactccaccggctccggaaaagccgcgccagctcaccgccagagagctcgagagg
cagcgaattattgaagaggagcttaaaagcggaaagcacgatgagcacgacgacgatccg
gtttggtcaatgaaaaaggcgcaagcggagaaaaaaagtcgaatgtgcccgtatttggac
actattgatagatcagttttggactttgatttcgagaaacagtgctccgtttcactttcc
catcaaaatgtgtacgcctgcatggtttgcggcaaatattttcagggccgcggtacaaac
acccacgcatacacccacgcactggagactgatcatcacgtttttctgaatctacaaaca
ctaaaattctactgtcttccagacaattatgaagttattgatccatcattggaggatatt
aaatatgtgctaaagccgacgtataccaaagaaatgattgcttcaattgataagcagtca
aaaatggtccgcgcctacgacgattcgacctactttccgggcgttgttggactcaacaat
atcaaggcaaacgactactgtaacgctatacttcaggctctgtcagcggtccgtccactg
cgtaattggtttctaaaagaatcaaattacacttcaatcaaacgtccaccaggtgataag
ctcacattgctcccacaacgctttggagagctcatcagaaagctatggaatccacgtgca
ctccgtacacacgtctcacctcatgaaatgcttcaggcggtcgtcgtgtgctccaacaag
aaatttcaatttattaagcaaaatgatgcggcggattttatgcttttcctgctcacaaca
cttcattcggctctgaatggaactgacaagaagccgtcgatcatttcaaaaacattccgc
ggtcgaatgcgtcaatattcacgtcgagtaataccagctgaagatacagacgaagagaaa
tatatgaaacttcgaatgccagaatatcaggaaaaagtgattgaatcaccatttttgtac
ctaactctggatcttccatcggctccactctatcgtgatgttcaactgcagaacattatt
ccacaagtaccactgagcactttattggagaaatttgatggaaaaactgagaaggaatac
ccaacgtacaacgacaataatatcatgaaacgcttcgaattgctacaactacccgatttt
ctcataatcacctacaaaagattccagaaaaatcagtggttcgtcgaaaaaaacccgact
atcgtcaattttcccattgcgaacgttgatttttacgattgcctggctaaggatgcccgt
gctaatcataaatacactacgtatgatcttgtggcaaatgtcgtacacgaaggaactttt
aaagatggaaattatcgaattcagattgttcatgagggctccggaaaatggtttgaactc
gaggatttgcacgtgaaggaccttttgccgcagatgattgtgctcgccgagtcgtatatt
caaatttggcggcttaacaaggagcaaactagagacgaacgtgccgagggagagcccatg
cagaattag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (41)   

Download RDF
DBGET integrated database retrieval system