KEGG   Caenorhabditis elegans (nematode): CELE_K04B12.3
Entry
CELE_K04B12.3     CDS       T00019                                 
Symbol
smg-8
Name
(RefSeq) Nonsense-mediated mRNA decay factor SMG8
  KO
K18734  protein SMG8
Organism
cel  Caenorhabditis elegans (nematode)
Brite
KEGG Orthology (KO) [BR:cel00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_K04B12.3 (smg-8)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Other surveillance factors
     CELE_K04B12.3 (smg-8)
SSDB
Motif
Pfam: Smg8_Smg9 Thg1C
Other DBs
NCBI-GeneID: 175103
NCBI-ProteinID: NP_497003
WormBase: WBGene00010551
Ensembl: WBGene00010551
UniProt: O62301
Structure
Position
II:<14441409..>14447233
AA seq 873 aa
MDIAKWVEHARTCYSTQLDTKIKVIGVIGKDYPDHGKGDNINCYLRENVFPVAATEDETC
TIRGHFSEDDQILFLVMNGVDDVANIRKCLKSNPKSNYFDAMAESECQQIRMLHFLFISC
HFIIIFEQTSRIDLELMRFLKKVNSARIQLRKKINQRLVASDLRDVSFNNRILSSAESEG
RMVVPRLLIAFQRNNIRPDVNPGKKLQRELYEKLEKNLDNQFSDILKLYDLIDCGASSLC
QLNETIPVVHLLNPKIVKRDIIGEMFEILMADAENTKISGNAGTLPSNNSFVKFLEDNFR
SEKNEISLENVIELMNCLQCVLDGDLEEKHEKTAIQTFIKRIQNDHMEEARRLYTNAQRP
GERRGADRFKDSEKPVKIRSKEEHLMRFNEATHYIDSVVGVNSREALSQLQAQCNEMWQS
DMRACESVSMMGRSCVRKIHPTFGDQTAPEHRWTAHDASNTMISTCVCGRKQLIRPEPFS
VKEANSDFYDHPDFKCCRRLWRYQFQLYQEDSEEKDDIMWADRESNSLRAAKKMAQREDE
LAEEDTDLDIPESLLDPDSTSPSDEDDVRVRTMSSSESSSQESDAYLRPTSRRDESMASK
TERELTIDHVKRMQKLELAGKSEDFLITVPNSMTTGKLPIFPSWHLTSLGDSSIYSHGAG
LKNQPNFKIGGDYLSPVVVLLDVNFDVWNRDLNKIRSEDFSRKCGKDNKDDSARVKLFVG
FEYECSRGHRFFVDYNGEPLIYSKGSNVIRESAHRSSLGNVLQADLPIRRPCTCRKLPLQ
SAQLQKVHVVTPKAPVHITIDPKVLIPTHEGVYGTGQEPLELHHSKYYILHLPTVYSGPS
GAWMPGEFNPEKQGVWMGGALKVAYKPVMSFKW
NT seq 2622 nt   +upstreamnt  +downstreamnt
atggacatagctaaatgggtagaacatgcaaggacttgttacagcactcaacttgacact
aaaatcaaagttattggagttattggaaaagactatccggatcacggaaaaggagataat
attaattgttatttaagggaaaatgttttcccagtggctgcaactgaagatgagacttgt
acgattcgcggtcacttctccgaagacgatcagattttgtttctggtgatgaatggtgta
gatgacgtcgcgaacattcgaaaatgtctaaaatcaaatccaaaatcgaactatttcgat
gcgatggctgaaagtgaatgccaacaaatccgaatgctgcattttttgtttatttcgtgt
cattttatcattatttttgagcaaacatcaagaatcgacttggaactcatgagattttta
aaaaaagtcaactcggcgagaattcagctgcgaaagaaaataaatcaacgtctggttgct
tcggatcttcgcgatgtctcttttaataatcgaattttgtcatctgcagaatctgagggt
cgaatggttgtgccacgtcttttgattgctttccagcggaataatatccggccagacgtg
aatcccggcaaaaagcttcagcgtgaactctacgaaaaactggagaagaacctcgataat
caattcagcgacattctgaagctctacgaccttatcgattgcggagcatcatccttatgc
cagctgaacgaaacaataccggtcgtccatcttttgaatccaaaaattgtaaaaagagat
atcatcggagaaatgttcgagattctgatggccgacgctgaaaatacgaaaatatccgga
aacgccggaacacttcccagcaacaattcgttcgtcaaatttttagaggacaattttcgc
tcggagaaaaacgaaatttctctggaaaacgtgatcgaattgatgaactgcctacagtgt
gttctcgatggtgatttggaggaaaaacacgagaaaactgccattcaaacatttatcaaa
agaattcaaaatgaccatatggaagaagctcgacgactttacactaatgctcagcggcca
ggagagagacggggtgcggatcggttcaaagattctgaaaaaccggtgaaaattcgaagc
aaggaggagcacttgatgaggttcaacgaagccactcattacatcgattcagttgtcggg
gtgaattcacgtgaagcgctgtctcaacttcaggctcaatgcaatgagatgtggcaatcc
gatatgcgtgcatgcgaatctgtctcaatgatgggccgctcgtgtgttcggaaaatccat
cccacatttggtgatcagacggctcccgagcaccgctggaccgcgcatgacgcttcaaac
acgatgatttccacgtgtgtctgcggacggaaacaactgatacgtcctgaaccgttctct
gttaaagaagcgaattccgatttttatgatcacccggatttcaagtgctgtaggcgattg
tggagatatcagtttcagttatatcaagaggattctgaggagaaggatgacatcatgtgg
gctgaccgagagtcaaattctctccgagccgcgaaaaagatggctcagcgcgaagacgag
ttagccgaggaagatactgacctggatattcctgaaagcctgttggatcccgattcaacg
tcaccatctgacgaagatgacgtcagagttagaactatgagcagttcagagtcttcatca
caagaatcggatgcctaccttcgtccgacgagtcgccgcgatgaatctatggcatcgaaa
actgaacgagaattgactatcgaccacgtgaagcggatgcaaaagctcgaactcgctgga
aaatcagaagattttctgatcactgtgcccaactcgatgaccaccggaaagctgccaata
tttccatcgtggcatctaacgtcacttggtgactcgagtatttacagtcatggagctgga
cttaagaatcaaccgaatttcaaaattgggggagattatttatcgcctgtagttgttcta
ttagatgtgaacttcgacgtctggaaccgcgatctgaacaaaattcgaagcgaggatttc
agtcgaaagtgcggaaaagacaacaaggacgactcggcacgtgtcaaactttttgttgga
ttcgaatatgaatgttcccgtggtcaccgcttctttgtggactacaacggagaaccgctc
atctactcgaaaggatcgaatgttatcagagaatccgcgcaccgaagttcgttgggaaat
gtcctccaggctgatcttccgattagaagaccatgtacgtgccggaagcttccactgcaa
tccgcacaactgcagaaggttcatgtggtgactccaaaagcaccagttcatattactatt
gatccgaaagttttgattccaactcacgaaggcgtctatggaactggacaggagccgctg
gaacttcatcattcaaaatactacatcctccacctgccaactgtctactctggtccatcg
ggagcctggatgcccggagagttcaatcctgaaaagcaaggtgtctggatgggcggagcg
ctgaaagtcgcctacaaacctgtgatgtcgttcaagtggtga

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Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
3D Structure (2)   
   PDB (2)   
Protein domain (2)   
   Pfam (2)   
All databases (46)   

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