KEGG   Caenorhabditis elegans (nematode): CELE_T02H6.2
Entry
CELE_T02H6.2      CDS       T00019                                 
Symbol
thoc-1
Name
(RefSeq) Death domain-containing protein
  KO
K12878  THO complex subunit 1
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03013  Nucleocytoplasmic transport
cel03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CELE_T02H6.2 (thoc-1)
  09122 Translation
   03013 Nucleocytoplasmic transport
    CELE_T02H6.2 (thoc-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_T02H6.2 (thoc-1)
   03041 Spliceosome [BR:cel03041]
    CELE_T02H6.2 (thoc-1)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     CELE_T02H6.2 (thoc-1)
Spliceosome [BR:cel03041]
 Complex C
  Other components
   EJC/TREX
    CELE_T02H6.2 (thoc-1)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CELE_T02H6.2 (thoc-1)
SSDB
Motif
Pfam: efThoc1 DUF6779
Other DBs
NCBI-GeneID: 173460
NCBI-ProteinID: NP_493796
WormBase: WBGene00020172
Ensembl: WBGene00020172
UniProt: Q9N5E3
Position
II:702107..>708608
AA seq 665 aa
METVIENRDLDGLKEVVKAEKKTAKDDEFVLLKVDGFLKKRGFKVAEQPSATKEELARRH
FHFVMNCSKLGLCSKNTPLSTLQDLLEMSSIEECKQIFSIVEENMNEFKQPGFIETAQNN
ILRFCNDLLRRLSRTAETSFCGRIMFFLSRFLPLTEKSGVNFMGHFNTLNVTNYDESETD
GEALLAATSSAPTPTEGAEDMETGEIEEDNSKEIQVTPEMYRQFWSLQKFMSNPNSIYEK
EKFLTFKTDLTAVLTLMTSNKLEKLSSEEEEALENRQKKQQKGSSNDVFFTKYLTSPKLL
ALQLNDSSFRRYFLMQAIIIFQYLTAESRFKPPAKKMVLNEDQAKYVSECEDKCYRLLAD
TMPRGTAFVAGLKRIMLREQEWNTWKNANCADFSEKADKGAMQMYKKRQRIPFNPNSLDL
GTPELTKLWTNEPDVLKACKSDKRKFIPKLPDFIRDPIDEMDPEQQVEEQYKQINDSAFQ
WRAARLLMHKSPGYVTKTDTKTDPTTNIKEFLERNMYNAAKNFNEFKESIENREKKEAEA
RKKVEESLKRKLDSSKVKPSQTSSPNPYTDTILSDEHLTQLARDLSKFKSNLAKCFGTKL
PADDVTSDEKICFKILKSWAEKNGRSGRSLLNTLITDLDVIEVAQASMKVRFFSEKMKNF
SEKSF
NT seq 1998 nt   +upstreamnt  +downstreamnt
atggagacagttatcgaaaatcgggatttggacgggttaaaggaggttgtgaaggcggaa
aaaaagactgcgaaagacgacgaatttgtgcttctaaaagtcgacgggtttctgaaaaag
cggggattcaaggtcgccgagcagccttcagccaccaaggaagagcttgcaaggcggcat
tttcattttgtgatgaattgctccaagcttggtttgtgctccaaaaacactcccctgagc
actctacaggacctcttggagatgagctcaattgaggagtgtaagcagattttcagcata
gtagaagagaatatgaacgagtttaagcagcccggcttcattgaaaccgcccagaacaat
attctacgcttctgcaacgatttgctccgccgcttgagtagaaccgctgaaacatcgttc
tgcggaagaattatgttctttctctcgagattcctcccgctaaccgaaaaatccggtgta
aactttatgggacacttcaacacgcttaacgttaccaactacgacgagtctgaaaccgac
ggtgaagctcttctcgctgccacgtcatcggctccaacacctacggaaggagcagaggat
atggaaactggagaaatcgaagaggataactcaaaagaaatccaagtaactcccgagatg
tatcgccagttttggtcccttcaaaaattcatgtcaaatccgaattcaatatacgaaaag
gagaagtttttgacgtttaaaacggatttgacagcagttctcaccctaatgacgtcgaat
aagctggaaaaactctcctccgaagaggaagaagctctggaaaatcgacagaaaaagcag
caaaaaggatccagtaacgacgtgttttttaccaaatatttgacgtctccaaagcttctc
gccctccaactcaacgattcttcattccgacggtactttttaatgcaggcgatcattatt
tttcaatatttgacagcagaatctcgatttaaacccccggcaaaaaaaatggtgctaaac
gaggatcaagcgaaatatgtgtcagaatgtgaggataaatgctatagattgctggctgat
acgatgccacgtggcactgcattcgttgccgggctcaagcgaattatgctccgcgagcag
gagtggaatacgtggaaaaatgcgaattgtgcagatttttccgaaaaagccgataaagga
gccatgcagatgtacaaaaaacggcaacgcattccattcaacccaaattctctcgatctt
ggaactcctgagctcacaaaactctggacaaatgagcccgatgtgctcaaagcctgtaaa
tcggataagagaaaattcatcccaaaactgccggatttcattcgcgatccgattgacgag
atggatcccgagcagcaagtcgaggagcagtataaacaaatcaacgatagcgcattccaa
tggcgagccgcccgtctcctaatgcacaaatctccgggatacgtgacaaaaaccgacaca
aaaaccgatccgacgactaatatcaaggaatttttggagagaaatatgtataatgcggca
aagaattttaatgaattcaaggaatcgatcgagaatcgtgagaaaaaggaggcagaagct
cggaaaaaagtggaagaatcgctcaaaaggaagctcgattcgtcaaaagtgaagccaagc
caaacatcttctccgaacccctacacagatacaattctctcggatgagcatctcacccag
ttggctcgagatttatcgaaatttaaatcaaatctcgcgaaatgctttggcacaaagctc
cccgccgatgacgtcaccagtgatgagaagatttgctttaaaattctcaaaagttgggct
gaaaagaatgggagaagcgggcggagtctgttgaatacgctaattaccgatttggatgtg
attgaggtggctcaggcgagcatgaaggtacggtttttcagcgaaaaaatgaagaatttc
agcgaaaaatcattttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (37)   

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