KEGG   Caenorhabditis elegans (nematode): CELE_Y48E1A.1
Entry
CELE_Y48E1A.1     CDS       T00019                                 
Symbol
rpoa-1
Name
(RefSeq) DNA-directed RNA polymerase subunit
  KO
K02999  DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CELE_Y48E1A.1 (rpoa-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cel03021]
    CELE_Y48E1A.1 (rpoa-1)
Enzymes [BR:cel01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CELE_Y48E1A.1 (rpoa-1)
Transcription machinery [BR:cel03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Core subunits
     CELE_Y48E1A.1 (rpoa-1)
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 175015
NCBI-ProteinID: NP_001022450
WormBase: WBGene00012999
Ensembl: WBGene00012999
UniProt: G5ED21
Position
II:complement(13670626..13694795)
AA seq 1737 aa
MDFFVRNGEEPYMQFSNFKLRSYFPHEIDKLSVLKITQTKTFDEVGHPIAGGLYDPILGP
DNTFDMCMTCNQYERHCPGHMGHIQLAVPVFNPLLFQFTYNLLKGSCVHCHRLTCKGDGV
NARMLLAQLRCFELGVEHVAFDLESILRDKIANADLFGDDDSKTFNDVDACIAQLANKPL
SELTAFKSMPTKNSVQLKKDIITEFLRSHLFKRLQKCPLCKNRNGVLRNDGARSILIDFT
SGARGGGKSKKAIIIIGDNGYNEESSTDEDEEKKGGGGAEVTGDVVDLDEGSLEMQMKNV
RTGECDKLAWRGAEVREHFRMLFKNDGKLLLKLFPMLVDELNGEDMICPLDGLFLERILV
PPKKFRPIRMFKGAQYEDPQTLNLRKVLEATETISAISLIMKGDTSAQLKELIANRVRGK
TINAQMHDAYLQLQLRANAIFDQDLNKGDRDSIAGIKQILEKKQGLFRMHMMGKRVNFAC
RSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNVNEMKGLLRQGPHQHPGANFFVEPS
GKKTMLGDKPEEKKRRMQMAKTLNAATTENLRQTPKVLRHMKNGDMIMMNRQPSLHKPSI
LGHRARVLTGQRALRMNYAPCKAYNADFDGDEMNGHLVQSHIAQTEVREIANVGSNFLVP
KDATPLLGLIQDHVVSGVLLSVRDRFLNKEDFMHLVLASFAQYSKRIEIPPPTILYPKRL
WTGKQVITTIVKNCIPDGKPLINLDGKAKTPLSCWIVPGFDAPQFDMSESHVVFRQGELL
VGVLDKAHFGATQFGLAHCAFELYGHRCGVQLLSCFSRLFTTYLQFHGFTLGVADILVVK
DADGKRKEAVMESRTIGNQVVKTAFGLPDTATPAEIKRTLAATYCNPRGQGTDVKMLDFG
MKQGIAKYNDAITKSCVPTGLLRLFPQNALQLMIQSGAKGSAVNAIQISGCLGQIELEGK
RMAVTIAGRTLPSFRCFDPSPRAGGYIDQRFLTGMNPQELFFHTMAGREGLIDTAVKTSR
SGYLQRCIIKHLEGIRVHYDSTVRDHDGSVIQFRYGEDGMDTTKATFLNKKTMPFLEDNL
EAVTLASKPEGVTDADFGIKETEKRYKKIVKWKKKAEKSGKSGTKKSYFSAFTNFSAEHI
GMEKKRILAMWFELSLEEREQYARGIPKKCPEAVDERFNPTCKLGALPEKMLDEIEGFCT
RRVKKVDDEEPPKEVLKRTLYWKGMRSLADPGENVGLLAAQSIGEPSTQMTLNTFHFAGR
GEMNVTLGIPRLREILMTASKSIATPSASIAVIAGTSRDRIDSIKRELDRVYLKQLLKNF
SLEEKITLTQNQSCRRYHLRIDILAAEKRELGARHLKRSQIMEEIEKRFILRVAQAIKKK
YHEITDYQQMSHRTMRQGNMAAGIETGGTKNRGLQGPDNGDSSDEEADGGREADAAEARL
HRRHRDEGADYEGEDEERVEVREEEEPMDSDSEDVKKEGLDGEDQTTEPLLVNSSRIQSV
QRLSENISSYTYDVKSNKWCEVVFELPLRNKTKMDVSSIVEKEVELFIVHQTPGIERCVE
TTEQKNGKEMTILQTQGVNLAAFFKHADVLDVNSVYSNDLNLILENYGVEACSKAITTEM
NNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQKMTFETTMAFLREAL
LHGEEDNVNSPSARLVMGALPRGGTGSFDLLLDTKMQSEREEHEAARARKRNAKQKF
NT seq 5214 nt   +upstreamnt  +downstreamnt
atggatttcttcgtcagaaatggcgaggagccgtatatgcaattctcgaatttcaagctg
cggagctattttccgcatgaaatcgacaagctcagtgtgctcaaaatcacgcagacaaag
actttcgatgaggtcggtcacccgattgccggcggtctttacgacccgattttgggccct
gacaacactttcgacatgtgcatgacgtgtaatcaatacgaacgtcattgtccaggacat
atgggacatattcagctggcggttccggttttcaacccgcttctcttccagttcacctat
aatcttctcaaaggctcctgcgtccactgccatcgattaacctgcaaaggagacggagtg
aatgcccgaatgctgctcgcccagctcagatgcttcgagctcggcgttgaacacgtggcg
ttcgatctggaatcaattctgcgggataaaatcgcaaatgctgatcttttcggcgatgac
gattcgaaaaccttcaacgacgtggatgcttgtatcgctcagctcgcgaacaagccgctt
tcggagctcaccgcgttcaaatcgatgccaaccaagaatagtgttcagctgaaaaaagat
attatcaccgaattcctcagaagtcacctgttcaaacgtctccaaaaatgtccgctctgc
aagaatcgcaacggagtcctgcgaaacgacggagctcgctcgattctcatcgatttcacc
tccggggctcgcggcggcggaaaatccaaaaaagccattatcatcatcggagataatgga
tataacgaggaatcttcgacagatgaggatgaggagaagaagggcggcggcggcgcagag
gtcaccggagatgttgtggatttggatgaaggaagcctggagatgcagatgaagaatgtg
agaactggagaatgcgacaaactagcgtggagaggtgctgaagtccgcgagcacttcagg
atgctgttcaaaaacgacggaaagctgctgctcaagctgttcccgatgcttgtcgacgag
ctcaacggagaggacatgatctgcccgctagacggtctcttcttggagcgaatcctggtt
ccaccgaagaaattccgcccgatccgaatgttcaagggcgctcaatacgaggatccacag
actctgaaccttcgtaaagttctcgaagcgaccgagacaatctcggcgatctctctaatc
atgaaaggcgacacaagtgctcagttgaaggagctcatcgcgaatcgggtccgcgggaag
acgatcaacgcgcagatgcacgacgcctacctgcagcttcagcttcgcgccaacgcgatc
ttcgatcaagatctcaacaaaggcgacagggatagcatcgccggtatcaagcagatcttg
gagaagaagcagggattgttcagaatgcatatgatgggaaaacgagtcaactttgcttgt
cgatcagtcatcactccggatccctacctggatattgatgagatcggaattccggatatt
ttcgcgaaaaagctcactttcacagagccagtgaatgcttttaacgtgaacgagatgaag
gggcttctccgccaaggcccccaccagcacccgggagccaatttcttcgtggagccttcc
ggcaagaagacgatgctcggtgataagcctgaagagaagaagcgtcggatgcaaatggcc
aaaaccctcaacgcggcgaccacagaaaacctccgccaaacgccaaaagtgttgagacac
atgaaaaacggcgatatgatcatgatgaatcgtcagccatcgcttcacaagccgtcgatc
ctcggccaccgagcccgtgtgctcaccggacagcgggctcttcggatgaactacgcgcct
tgcaaggcctacaatgcggatttcgatggagacgagatgaacggacacttggtgcaatca
catatcgcgcagacggaagttcgcgagattgcgaacgtcggaagtaactttttggtgccg
aaggatgcgacaccgctgttgggattgattcaggatcacgtggtgtcgggtgtcttgttg
agtgttcgggatcgattcctgaataaggaggattttatgcaccttgtgctcgcctcattc
gcccagtactcgaagaggatcgagattccaccaccgacgattctctatccgaagcggctt
tggactggaaagcaggtcatcaccacaatcgtcaaaaattgtattccagacggaaaaccg
ctcatcaatctcgacggaaaagccaagacaccgctcagctgctggattgtgccgggattc
gatgctccgcaattcgacatgagtgaatctcatgtggtgttcaggcaaggagagctgctc
gtcggagttctcgataaggctcactttggagcaacgcaatttggattggctcattgtgca
tttgagctttatggacatcggtgtggagtgcagttgttatcgtgtttttcgcggcttttt
acgacctatttgcagttccacggcttcaccctcggagtcgccgacattctcgtcgtcaag
gatgccgacggaaaacgcaaggaagccgtcatggaatccagaaccattggaaatcaagtc
gtcaagacagcgttcggccttccagacactgcgacgccggcagagatcaagcgaacgctc
gcagccacctattgtaatccacgtggacaagggactgacgtgaaaatgttggatttcggt
atgaagcaaggaatcgccaaatacaacgacgccatcacaaaatcctgtgtgccgactggt
cttctccggcttttcccacaaaatgctctgcaactgatgattcaatccggagccaaagga
tccgcagtcaatgctattcagatttcaggctgtctaggccaaattgagttggaaggcaag
cgtatggctgtgacgatcgccggacggactctcccatcgttccgatgctttgatccatcc
ccgcgggcaggtggatacattgatcagcgatttttgaccggaatgaatccacaggagctg
ttctttcacacaatggccggtcgagaaggtcttattgatacggctgtaaagacttcccgg
tcgggatacctccaacgttgtatcatcaagcatttggagggaatccgtgtgcactacgac
tcgaccgtcagggatcatgatggatcggtgattcagtttcggtatggagaggatggaatg
gacacgacgaaggcgacttttttgaataaaaagactatgccgttcctggaagataatctg
gaagcggtgacacttgcgtcgaagcctgaaggagttacagatgctgattttggaattaag
gagaccgagaagcggtataaaaagattgttaagtggaagaaaaaggccgagaaatctggg
aaatcgggcacaaaaaagtcctatttctcagcattcacaaacttctccgcggagcacatc
ggcatggagaagaagcggatccttgcgatgtggtttgagctttccctcgaagaacgcgag
cagtacgcccgtggaattccgaaaaagtgtccggaagcggtggatgagaggttcaacccg
acgtgcaagcttggagccctaccggagaagatgttggatgagattgaggggttctgtacg
cggcgggtgaagaaggtggatgatgaggagccaccgaaggaggtgttgaagaggacgctg
tattggaaaggaatgagatccctcgccgatccaggagagaacgtcggactcctcgctgct
caatcaatcggagaaccatcaactcaaatgacactgaacactttccattttgccggtcgt
ggagaaatgaacgttactctaggaattccgcgtcttcgagaaattttgatgactgcgtcg
aagagcatcgcaacgccaagtgcatcgattgccgtcatcgctggaacatcaagggatcgt
atcgattcgattaagcgggagttggatcgagtctatttgaagcaattgttgaagaatttc
tcgttggaagagaagattacgttgacacaaaatcaatcctgccgccgctaccacctccgc
atcgacattctggccgccgagaagcgtgaactcggagcccgacacctgaaacgttcgcag
attatggaagaaatcgaaaagcgattcattctccgtgtggctcaggcgattaaaaagaaa
tatcacgagattaccgactatcagcaaatgtctcatcgtactatgcgtcagggaaatatg
gcagcgggaattgaaactggcgggacaaagaatcgcggacttcagggacccgacaatgga
gattcgtctgacgaggaagccgacggaggacgtgaagctgatgcagctgaagctaggctt
catcgcagacatcgagatgagggggcggattatgagggagaagatgaggagagagtcgag
gttcgagaagaagaggagccgatggattcggattcggaagatgtgaagaaggagggattg
gatggagaggatcagacgacggagccactactggtcaactcgtcgagaattcaatctgtt
cagcggctttccgagaatatttcatcgtatacgtatgatgtcaagtcgaataagtggtgt
gaagtggttttcgagcttccactgaggaataagaccaagatggatgtttcttcgattgtt
gaaaaagaagtcgaactattcatcgtccatcaaactccgggaatcgagcgatgcgtcgag
acgactgagcagaaaaacggaaaagaaatgacaattctgcagacgcaaggagtcaatttg
gctgcattcttcaagcacgcagacgtgctcgacgtcaattcggtctattcgaacgatctg
aacttgattctcgagaattatggagttgaagcttgctctaaggctatcactactgaaatg
aacaacgtgttcgccgtctacggtatcgaggtctcgaagcgacatctctctctaactgcc
gactacatgacattcaccggacaaatccaaccattcaaccgcggagccatgtcgtcgagc
tcatcacccctccaaaaaatgacgttcgaaacgacgatggccttcttgcgagaggcgctc
ttgcatggcgaagaagacaatgtgaactctccgtcggctcgtctcgtaatgggagccctt
ccgcgtggcggtaccggatcgttcgacttgctgctcgacacgaaaatgcaatccgaacgg
gaggagcacgaggcggcgagggctcgaaagcggaacgccaagcagaagttttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (44)   

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