KEGG   Caenorhabditis elegans (nematode): CELE_Y49E10.15
Entry
CELE_Y49E10.15    CDS       T00019                                 
Symbol
snr-6
Name
(RefSeq) putative small nuclear ribonucleoprotein E
  KO
K11097  small nuclear ribonucleoprotein E
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CELE_Y49E10.15 (snr-6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_Y49E10.15 (snr-6)
   03041 Spliceosome [BR:cel03041]
    CELE_Y49E10.15 (snr-6)
   03032 DNA replication proteins [BR:cel03032]
    CELE_Y49E10.15 (snr-6)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     CELE_Y49E10.15 (snr-6)
Spliceosome [BR:cel03041]
 Complex A
  U1 snRNP components
   Sm proteins
    CELE_Y49E10.15 (snr-6)
  U2 snRNP components
    CELE_Y49E10.15 (snr-6)
 Complex B
  U1 snRNP components
    CELE_Y49E10.15 (snr-6)
  U4/U6.U5 tri-snRNP components
    CELE_Y49E10.15 (snr-6)
 Complex C
  U2 snRNP components
    CELE_Y49E10.15 (snr-6)
DNA replication proteins [BR:cel03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     CELE_Y49E10.15 (snr-6)
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 176668
NCBI-ProteinID: NP_499620
WormBase: WBGene00004919
Ensembl: WBGene00004919
UniProt: Q9XTU6
Position
III:complement(12429172..12429629)
AA seq 90 aa
MSTRKLNKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEV
NMKTKGRNKIGRILLKGDNITLIHAAQQEA
NT seq 273 nt   +upstreamnt  +downstreamnt
atgtcgacgagaaagctcaacaaagtgatggttcagcctgtgaacctcatcttcagatat
ctccaaaaccgcactcgggtccaaatctggttgtacgaggatgtcacccaccgtctcgag
ggctacatcatcggattcgacgagttcatgaatgtcgtgttcgacgaagccgaggaggtg
aacatgaagacgaagggacgcaacaagatcggcagaattcttctcaaaggagacaacatc
actctcatccacgccgcccaacaagaagcctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (19)   

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