KEGG   Caenorhabditis elegans (nematode): CELE_Y67H2A.1
Entry
CELE_Y67H2A.1     CDS       T00019                                 
Symbol
cpsf-3
Name
(RefSeq) Cleavage and polyadenylation specificity factor subunit 3
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    CELE_Y67H2A.1 (cpsf-3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cel03021]
    CELE_Y67H2A.1 (cpsf-3)
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_Y67H2A.1 (cpsf-3)
Transcription machinery [BR:cel03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     CELE_Y67H2A.1 (cpsf-3)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     CELE_Y67H2A.1 (cpsf-3)
    U7-dependent histone pre-mRNA processing factors
     CELE_Y67H2A.1 (cpsf-3)
SSDB
Motif
Pfam: Beta-Casp CPSF73-100_C Lactamase_B Lactamase_B_6 RMMBL Lactamase_B_2 Lactamase_B_3 DUF4467
Other DBs
NCBI-GeneID: 178285
NCBI-ProteinID: NP_502553
WormBase: WBGene00013460
Ensembl: WBGene00013460
UniProt: Q95PY8
Position
IV:complement(13273846..13282878)
AA seq 707 aa
MEEEGDNSDSLCFTPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEI
ENIDLLLITHFHLDHCGALPWLLQKTAFQGKCFMTHATKAIYRMLLGDYVRISKYGGPDR
NQLYTEDDLEKSMAKIETIDFREQKEVNGIRFWPYVAGHVLGACQFMIEIAGVRVLYTGD
FSCLEDRHLCAAEIPPITPQVLITESTYGTQTHEDRAVREKRFTQMVHDIVTRGGRCLIP
AFAIGPAQELMLILDEYWESHQELHDIPVYYASSLAKKCMSVYQTFVNGMNSRIQKQIAV
KNPFIFKHVSTLRGMDQFEDAGPCVVLATPGMLQSGFSRELFESWCPDTKNGCIIAGYCV
EGTLAKHILSEPEEIVSLSGEKLPMRMQVGYVSFSAHTDYHQTSNFVKALKPPHLVLVHG
ELHEMSRLKSGIERQFQDDNIPIEVHNPRNTERLQLQFRGEKTAKVIGKLAQRVPENNET
ISGVLVKNNFSYSIMVPEELGSYTSLRISSLEQRMSVHYSGSLKLLIFNLQQLNDDACLI
QNIKLKEISKKGSVTQAITVFQGKVNVTVYGNDHVVVVRWDSNPVYDMYADSVVAAILHA
QANPVPDKYLPSNSSFPQFNTAIEGMVKHICGDDVSIVMSERGLLAQFEEDGRRLLVEGS
SDGPVMMGGDDPMDDPTTSHLLQNLTEKMRQIVTTNTEVNEIDDMEC
NT seq 2124 nt   +upstreamnt  +downstreamnt
atggaagaggaaggcgataattcggattctctttgtttcacgccgctcggatcaggccaa
gaagttggtagatcatgccatctactggagtacaagggaaaacgtgtaatgctcgattgt
ggagtccatccaggactccacggagttgatgctctaccattcgtggatttcgttgaaata
gaaaacattgatctacttctcatcactcattttcatttggatcattgtggtgcacttcca
tggttattacagaaaacagcattccagggaaaatgtttcatgacacatgcaactaaagcc
atctatcgaatgcttctcggtgattatgtacgaatttcaaagtatggaggaccggatcgt
aatcagctttatactgaagatgatttggagaaaagtatggcgaaaattgaaacaattgat
tttcgagagcagaaagaagtgaatggaatcagattttggccgtatgtagcaggtcacgta
cttggtgcatgccaatttatgattgaaattgctggagttcgtgttctctacactggagat
ttttcatgtctggaagatagacatttgtgtgcagcagagattcctccaattactccacaa
gttctcattactgaatccacatacgggacacaaactcatgaagatcgtgcagttagagag
aagagatttacacaaatggttcatgatattgtgacacgtggaggtcgttgtctaattcca
gcttttgcaattggtccagctcaagagcttatgcttattcttgatgaatactgggaatca
catcaagaacttcatgatattccggtttattatgcatcatcactcgcgaaaaagtgtatg
tcagtatatcagacattcgtaaacggaatgaattctcgtattcaaaaacaaattgccgta
aaaaatccgttcattttcaaacatgtttcgactctccgtggaatggatcaatttgaagat
gctggaccatgtgttgttctggcaactcccggaatgcttcagagtggatttagtcgagaa
ttattcgaaagttggtgcccagatacgaagaatggatgtattattgctggttattgtgtc
gaaggaactcttgctaagcacattctatccgaacccgaggagatcgtctcattgagtgga
gaaaagttgccaatgagaatgcaagtcggctatgtctcattctcagctcatactgattat
catcaaacatcgaatttcgtaaaagctctaaaacctccacatttagtacttgtacacggt
gaacttcatgagatgagtcgcctcaagtcaggcattgaacgacaatttcaagatgataat
attccaattgaagtacacaatccccgcaatactgaacggctgcaattacagtttcgaggt
gaaaaaacggcaaaagtaattggaaaattggcacaacgagtaccagaaaacaatgagact
atcagcggagttctcgtcaaaaataacttttcctattcgatcatggtacccgaagagctt
ggatcatacacttcacttcgaatttcaagtcttgaacaaagaatgtctgttcattactcg
ggatcattgaaacttttaatttttaatttacaacaactcaatgatgatgcttgtttaata
caaaatattaagcttaaagaaatatccaagaaaggaagtgtcacgcaagctattactgtg
tttcagggaaaagtcaacgtaacagtgtacggaaatgatcatgtggttgttgttcgatgg
gattctaatccagtatatgatatgtatgctgattcagttgtcgctgcaattcttcatgct
caagccaatccggttcctgataaatatcttccctcaaattcgtctttcccacaattcaat
acggctatagaaggaatggttaaacatatctgcggagacgacgtttcgatagtaatgagt
gaacgtggattgcttgcccaattcgaagaggatggtcgacgtctcctggtagaaggatct
tccgatggtccagttatgatgggtggtgatgatccgatggatgatccgacgacatctcat
ttacttcagaatttgactgagaaaatgcgacagattgtgactacaaacacagaagtgaat
gagattgatgatatggaatgttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (37)   

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