KEGG   Caenorhabditis elegans (nematode): CELE_Y73B6BL.18
Entry
CELE_Y73B6BL.18   CDS       T00019                                 
Symbol
smg-3
Name
(RefSeq) MIF4G domain-containing protein
  KO
K14327  regulator of nonsense transcripts 2
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03013  Nucleocytoplasmic transport
cel03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    CELE_Y73B6BL.18 (smg-3)
   03015 mRNA surveillance pathway
    CELE_Y73B6BL.18 (smg-3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_Y73B6BL.18 (smg-3)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     CELE_Y73B6BL.18 (smg-3)
   mRNA cycle factors
    P-body specific factors
     CELE_Y73B6BL.18 (smg-3)
SSDB
Motif
Pfam: MIF4G Upf2 DUF1319
Other DBs
NCBI-GeneID: 177397
NCBI-ProteinID: NP_500974
WormBase: WBGene00004881
Ensembl: WBGene00004881
UniProt: G5EDT8
Position
IV:complement(6362395..>6373089)
AA seq 1142 aa
MRRKVETSWLEELKKRVKYQETSRLQMVEIRETLLDNEKELRSLDSTLKKTTSFMKKVKL
LSAATVPQLIEELSKLNLSKFVEEMASGIIETKLKLSDIPKVTELCLAISAKYSNFSEQM
AGEFKKVLPVKKSDKIANVAKLRVDIIFLAELCLCGVFNEKEGLQVLGAVLSYLIQTDKT
DFVNVGLLATVSRTVGWQIANIVPIPMDDAETVEIQDEELPESSALSVEQKKSIRELFKS
YYDSLYSKTEKTCSARNKAMKRVKRQERSRGDAGDEEKTTLNDLQSELDSLRKMAIEISS
AIGVEMKPLKEEASDDEEDEAANLEMGRKLAEGAIKLWSDEETKAFYEDLIDLRQMVPKD
LYKESEQRTLSKAKMAERIEDVDMENINESGAMDAKRSSLQRGESEKETTPEDSQLQALL
KEAVDASEERGVSKWQSFVLDLDHLVSKYSTDQAAIYFVSNLNNKGCRKRLVKLMIDPPP
SRIDVVPFYARLVATLENVMPDLTTEIVTQLLEKFRGFLQQKPSSATAIIKVESKMVCVM
MIAELMKFGVISRAEGLSCLRQLVYDLRGHSVEMTATFMESSGLYLYRHTESHAKMKRLL
EVVKAKRERMKDQRQAMLIDNAYFTCLPPEDSKEERLRLKLDEEDTPMKRFIRHIILDIN
ESTVDVFLKCLRRLEWYDPEVADYAIRYLSSTWLLPIENLQHVASAIAGLCNLVHLQWIG
MAVIDSTIETIRISLENPGVYNQWAHSAAVYLAELYSFELCDEDLVLKILYQLISYPEPE
NSWRDLHRIRMICAMLEILREFFMKGSGKIKMRYFLSYFHRYYYIKKDAWDQEVAEQQPN
SGGETGENQNPLDVQTSFPYEVELAYTELCRQFRQKKSNSLRWPKNLKEAQDIVTKIEKK
FKGELKEFAGEHKDIEGDGLNELNVIEEDDEEDEDENRDSELDEDDSEEDRQKIENFSNA
VTKEEDDEFQRELDRMMGEGFRQSAMPVAAAQYDVTLPAAVKDRFNRSIKFAETVKDEPA
ASSSKQDNDDDEDVYEKSPTIAASGRQKQTRVTLMVRGKTNKPSLKTVNIDDDQLQERWK
EEKAREEQERADMKRLTLGQHRRIEMEEEKALLASLNSSRKGNAKRGQFRPQFPKPHLEG
EW
NT seq 3429 nt   +upstreamnt  +downstreamnt
atgcggcgaaaagtcgagacatcatggctggaagagctgaaaaagcgtgtaaaatatcaa
gaaacaagtcgtcttcaaatggtcgagattcgagaaactttgctcgataacgaaaaagaa
ttgcgaagtttagattcaacattgaaaaagacgacgagttttatgaaaaaagtgaagctt
ctcagtgcggccactgttccacaattaattgaagaattatcgaaattgaatttaagcaaa
tttgttgaggaaatggcgtcgggaattatagagacaaaattgaagttatccgatattccg
aaagtaacagagctctgccttgcaatttctgcgaaatattcaaacttcagtgaacagatg
gctggggaattcaaaaaagttcttcctgttaaaaagagtgacaaaattgcaaatgttgca
aaattgagagtggatattatcttcctcgctgaactttgcctgtgtggagttttcaatgaa
aaggaaggacttcaagttctcggtgctgtattaagttatttgattcaaacagataagact
gattttgtcaatgttggattattggctacagtatctagaactgttggatggcaaattgca
aatattgtgccaattccaatggatgatgctgaaacggtcgagattcaagacgaagaactc
cctgagtcatcagctctctcagttgaacagaaaaagtcgattcgtgagctcttcaaatca
tactacgattcactttattcgaaaaccgagaaaacgtgttcggcaagaaataaggcgatg
aagagagttaaacgacaggaaagaagccgtggagacgctggtgatgaggaaaagacaact
ttgaatgatcttcagtctgaattggattctctgcggaaaatggctatagagatatcgtct
gcaatcggtgtggaaatgaaaccgctaaaagaggaagctagtgacgatgaagaggatgaa
gctgccaacttggagatgggacgcaaacttgcagaaggagcaatcaagctgtggagtgat
gaagagacgaaggcattctacgaggatcttatcgatcttcgacagatggttcccaaggat
ctttataaagaatctgaacagagaactctcagcaaagcgaagatggctgaaaggattgaa
gatgtcgatatggaaaatatcaatgaatccggagcaatggatgcgaagagatcatcatta
caacgtggagagtctgaaaaggagacgacaccagaagattctcaacttcaagctcttctc
aaagaagctgtggatgcatccgaagaacgaggagtcagcaaatggcaaagttttgtactt
gatttggatcatcttgtcagcaagtactcaactgaccaagcagctatttattttgtttcg
aatctgaataataagggttgtcgcaagaggcttgtgaagcttatgatcgatccacctccg
tctcggatcgatgttgttccattttatgcccgacttgtcgctactctcgagaatgtgatg
cctgatttgacaactgaaatcgtaactcaactactcgagaaattccgcggatttttgcaa
cagaaaccatcgtcagctactgctataatcaaagtggaatcaaagatggtttgcgtgatg
atgatagctgaactgatgaagtttggagtaatttctcgtgctgaaggactcagttgtttg
agacaacttgtgtatgatttacgtggacattctgtagaaatgacagcgacattcatggaa
tctagtggtctttatctgtatagacatactgaatcacatgcaaaaatgaagagattattg
gaagttgtgaaggcgaaacgagaacgaatgaaagatcaaagacaagcgatgctcatagac
aatgcgtatttcacctgccttccaccagaagattcaaaagaagaacgtcttcgtttgaag
ctagacgaagaggatactccaatgaaacgatttattcgtcacataattctggatatcaat
gaatcaaccgttgatgttttcttaaaatgtcttcggaggcttgaatggtatgatccagaa
gttgctgattatgcaattcgttatctctcctccacgtggcttcttcccattgaaaatctt
caacacgtggcatctgcgattgctggtctctgtaatttggtacatcttcaatggattgga
atggctgtaattgattcaacaattgaaactattcgaatatccttggaaaatcctggagtc
tacaatcaatgggctcattctgccgccgtttatcttgcagagctctacagttttgagctg
tgtgatgaagatctagtcttgaagattctctatcaactgatttcatatccagaaccagaa
aattcgtggcgagacctgcaccgaattcgaatgatttgtgctatgctggaaattctacgc
gagttcttcatgaaaggctcgggaaaaatcaaaatgcgatatttcctatcatatttccat
cgttactattacatcaaaaaagatgcctgggatcaagaagttgccgaacaacaaccgaat
tcgggaggagaaacgggagaaaatcaaaatcctctcgatgttcagacaagtttcccgtat
gaagtcgaacttgcgtatactgaattgtgccgtcaattccgccaaaagaagtccaattcg
cttcgatggccgaaaaatttgaaagaagctcaagatatagtcacaaaaattgagaagaaa
ttcaagggagagttgaaagagtttgccggagaacacaaagacattgaaggtgatggtttg
aatgaactgaatgttattgaagaagatgatgaagaagacgaagatgagaatcgagactct
gaactggatgaagatgattctgaagaagatcgacagaaaattgagaatttctcgaatgcc
gtgacaaaagaagaagatgacgagttccagagagaactcgatcgaatgatgggagaagga
ttcagacaatcagcgatgcctgtagctgctgctcaatacgatgtcactctaccagctgct
gtaaaagatcggttcaatagaagtatcaagtttgctgaaactgtaaaagacgagccagcg
gcttcaagctctaagcaagataacgacgatgatgaggatgtctatgagaaatctcccaca
atcgcagcttctggacgtcaaaagcaaactcgtgtcacgctgatggtccgcggaaaaacg
aacaaaccatcgttaaagactgtcaacatcgacgatgatcagcttcaggaacgttggaaa
gaagaaaaagctcgcgaagagcaggaacgtgccgatatgaaacgattgactcttggacaa
catcgtagaattgagatggaagaggagaaagccttgttggcatcgttgaacagttctcga
aagggaaatgctaagagaggtcaattccgtccacaattcccgaaacctcacctcgaagga
gaatggtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (40)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (53)   

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