KEGG   Caenorhabditis elegans (nematode): CELE_ZK328.5
Entry
CELE_ZK328.5      CDS       T00019                                 
Symbol
npp-10
Name
(RefSeq) Nuclear pore complex protein Nup98
  KO
K14297  nuclear pore complex protein Nup98-Nup96
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    CELE_ZK328.5 (npp-10)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_ZK328.5 (npp-10)
   03036 Chromosome and associated proteins [BR:cel03036]
    CELE_ZK328.5 (npp-10)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     CELE_ZK328.5 (npp-10)
Chromosome and associated proteins [BR:cel03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    CELE_ZK328.5 (npp-10)
SSDB
Motif
Pfam: Nup96 Nucleoporin_FG Nucleoporin2 Nup98_GLEBS
Other DBs
NCBI-GeneID: 175852
NCBI-ProteinID: NP_001367842
WormBase: WBGene00003796
Position
III:complement(6013447..6019562)
AA seq 1678 aa
MFGQNKSFGSSSFGGGSSGSGLFGQNNQNNQNKGLFGQPANNSGTTGLFGAAQNKPAGSI
FGAASNTSSIFGSPQQPQNNQSSLFGGGQNNANRSIFGSTSSAAPASSSLFGNNANNTGT
SSIFGSNNNAPSGGGLFGASTVSGTTVKFEPPISSDTMMRNGTTQTISTKHMCISAMSKY
DGKSIEELRVEDYIANRKAPGTGTTSTGGGLFGASNTTNQAGSSGLFGSSNAQQKTSLFG
GASTSSPFGGNTSTANTGSSLFGNNNANTSAASGSLFGAKPAGSSLFGSTATTGASTFGQ
TTGSSLFGNQQPQTNTGGSLFGNTQNQNQSGSLFGNTGTTGTGLFGQAQQQPQQQSSGFS
FGGAPAATNAFGQPAAANTGGSLFGNTSTANTGSSLFGAKPATSTGFTFGATQPTTTNAF
GSTNTGGGLFGNNAAKPGGLFGNTTNTGTGGGLFGSQPQASSGGLFGSNTQATQPLNTGF
GNLAQPQIVMQQQVAPVPVIGVTADVLQMQANMKSLKSQLTNAPYGDSPLLKYNANPEID
GKSSPASTQRQLRFLAAKKGALSSSSDAQDSSFIIPPISKVMSDLSPAVTRSADVTKDLN
YTSKEAPPSLARGLRNSTFNPNMSLTNRSVHESSALDKTIDSALDASMNGTSNRLGVRGS
VRRSNLKQLDMSLLADSSRVGRESRVADPDALPRISESERRQDVVTSTPAVDPVQAVIQR
HNDRNRDPPSLNLDTTCDEHTGLEPVSAATSSAASVVSTPSEETVNVNSAAGVKLTKPDY
FSLPTINEMKNMIKNGRVVLEDGLTVGRSSYGSVYWPGRVELKDVALDEIVVFRHREVTV
YPNEEEKAPEGQELNRPAEVTLERVWYTDKKTKKEVRDVVKLSEIGWREHLERQTIRMGA
AFKDFRAETGSWVFRVDHFSKYGLADDDEPMDGSPPQQALQASSPLQVIDMNTSARDVNN
QVQRKKVHKATDAHHQEIILERVPAPAALGDVVPIIRRVNRKGLGGGTLDDSREESCIGN
MTTEFNESGHDSIIEEGQQPEKKPKLELLADLEYESSRFIRNLQELKVMPKANDPAHRFH
GGGHSAKMIGYGKSKLIDIGIVKGRSSHVGWSETGCLVWSAQPRHNQVLFGTIDRTSDVN
ENTLISMLDVNVHVSETSRKGPSSQSNSVKSSLTSNFVTYSDSYSSMFAKYIDVAQAGGY
DGHVSVWKLISALFPYERREGWSFERGEEIGEWLRTEAVKSVPDDRSADTSSNGVWNQLC
LGDIDKAFQIAIDNNQPQLATMLQTSAVCPEATVHCFKAQLDNWKKCETLHLIPKETLKC
YVLMSGLSHYEWDQDGKNHSINCLDGLNWIQALGLHVWYLRAWTGLEESYDAYQKDVNAG
RAASNRGDLPGELIKLACESQHSVEVVLDCAAGENPNDYFLQWHVWSLLYSVGYRTMSKT
SETRLHRNYSSQLEASSLSKYALFVLQHIDDDEERSTAVRSLLDRIARFTDNDMFDSISE
QFDIPSEWIADAQFSIAKSVDDSTQLFELAVAAKNYLEICRLFVDDIAPTAVVAGDHDAL
KAACAMVRPFENQIPEWGATGMVYTDYCRLINLIENDAEEELLQDVLESLETRLHAPTIS
KNSLQKLSLQTIGRVLFEYRADKNTLPEWTKLLGHRQMFKIFRDRSSWGIERFTIEFD
NT seq 5037 nt   +upstreamnt  +downstreamnt
atgttcggccagaacaaatcattcggctcatcgagttttggcggtggcagctctgggagc
ggtctatttggacaaaacaaccagaacaatcaaaacaaaggattgtttggtcagccagcc
aataacagtggaactactggccttttcggggcggcacagaacaagccggcaggatcaatc
ttcggagcggccagcaacacttccagcatattcggaagtccgcagcagcctcagaacaac
cagagttcattgttcggtggagggcagaacaatgccaacagaagtatctttgggtcaact
tcttcagcagctcccgcaagcagttccctattcggtaacaacgctaacaatactggaacc
agcagcatttttggttccaataataatgcaccatctggtggaggtctctttggagcatcg
accgtatctggaaccactgttaagtttgagccaccgatcagttctgatactatgatgaga
aatgggacaactcagacaatttccacgaagcacatgtgcatttctgcaatgtcgaagtac
gatggaaagagtattgaagagctccgagtggaggattacattgcaaatagaaaggctccc
ggaacaggaacgacttccactggcggtgggctttttggagcatccaacacaacaaaccaa
gctggaagcagtgggctttttggatcaagtaatgctcaacagaagacttctctgttcggg
ggagcttcgacgtcatctccatttggtgggaacacgagcacagcaaacactggaagttca
ttgttcggtaacaacaacgccaacacgtctgctgcaagtggatctcttttcggagctaaa
ccagcgggctcgtcactgttcggatctacagctacaacaggagcttcaacattcggtcag
acaactggatcgtctcttttcggcaatcaacaaccacagacgaatactggtggatcgttg
ttcgggaatacacagaatcaaaatcaatctgggtccctgttcggcaacacggggacgact
ggtaccggactcttcggccaagctcagcaacaaccacagcaacaatcgagtggattcagt
ttcggaggtgccccagcggcgacaaatgctttcggtcagccggctgctgcaaacaccggt
ggaagtctcttcggaaatacttcgacagccaatactggcagttcgttatttggtgcgaag
cctgcaacaagtaccggcttcacatttggagccactcagccaacaactacaaatgccttc
ggttccacaaataccggaggtggattgtttggaaacaatgcagcaaagccaggtggtttg
ttcggaaatacgacgaatactggaacaggcggcggtctctttggttcccagccacaagct
tcttcaggaggactgtttggttcaaacactcaagctacacagccgttgaatactggattc
ggaaatcttgctcaaccgcaaattgtaatgcaacaacaagtggccccggtacctgtgatt
ggcgttacggctgatgtcctccagatgcaagcaaacatgaagtcattgaagtcgcagttg
acaaatgcgccgtatggtgattcaccactactcaaatacaatgcgaatccagaaattgat
gggaagtcttcgccggctagtactcaacgacagctgagattccttgctgcgaagaaaggc
gctctgtcatcgtcttctgatgcacaagattcgtcgtttatcattccaccaatcagcaaa
gtgatgagtgatctttctccagcagttaccaggtcagccgatgtcaccaaagatttgaac
tacacttccaaagaagcgccaccatcacttgctcgcggacttcgaaacagcacattcaat
ccgaatatgtcgctgacaaatcgaagtgttcacgaatcaagtgccctcgacaaaactatc
gactcagctctggatgcttccatgaatggaacttcaaatcgtcttggagttcgtggatcc
gtgagaagatcgaatttgaagcagttggacatgtctctgctcgcagattcttcgagagtt
ggaagagaatcccgtgtagctgatccagatgctcttcctcgaatctctgaatccgaaaga
cgtcaagacgttgtcacttccactccagcagttgaccccgttcaggctgtaatccagaga
cataatgacagaaatagagatccaccatcgttgaacttggatacgacatgcgatgagcac
actggcttggagccggtgtctgctgcaactagttcagcagcatctgttgtgtcgacgcct
tctgaagaaactgttaatgtcaattcggcagcaggagtgaagcttacaaagcccgactac
ttttctcttccgacaatcaatgagatgaagaacatgatcaagaacggacgtgttgtgttg
gaggatggattgacagttggaagatcgtcgtacggaagtgtctactggccaggacgagtc
gagctgaaagatgttgctctcgacgagattgttgtatttcgtcatcgcgaggtgacggtt
tatccgaatgaagaagagaaagctccagaaggtcaagaactgaataggccagcagaagtg
acactcgaaagagtatggtacactgataagaagaccaagaaagaagtgcgagatgtcgtg
aaactctccgagattggttggcgcgagcatctcgagagacaaacgattcggatgggagcc
gcattcaaagattttcgtgcagaaactggaagctgggtcttccgtgtggaccatttcagc
aagtatggattggccgacgatgatgagccaatggatgggtcccctccacagcaagcacta
caggcatcttctccattacaagtgatcgacatgaatacatctgctcgagacgtgaacaat
caagtgcaaagaaagaaggtgcacaaggcaacggatgctcaccatcaagagataattctg
gaacgagttccggcacctgctgcattaggtgatgttgtgccgatcattcgtcgtgttaac
cgaaaaggtcttggtggtggaacattggatgatagtcgagaagaatcatgcatcggaaat
atgaccaccgaattcaatgaaagtggtcatgattcaattattgaagaaggtcagcagccg
gaaaagaagccgaaacttgaacttctcgctgatttggaatacgaaagcagtcgattcatt
cgcaatctccaggaactgaaagtcatgccgaaggccaacgacccagctcatcggttccac
ggtggtggacactctgctaaaatgattggatatggaaagagcaaactgattgatatagga
attgtgaagggaagaagttcacatgtcggatggagtgaaactggatgtcttgtgtggtca
gctcaaccccgacacaatcaagtactctttgggacaattgatagaacatcggacgtgaat
gagaacacgctaatctcaatgcttgatgtgaatgttcatgtatctgaaaccagtcgcaag
ggtccatcttcacaatccaactcggttaaatcttcgctcacttctaacttcgtcacttat
tctgactcatattcatccatgtttgccaagtacatcgatgtcgctcaagctggtggatat
gatggacatgtttctgtttggaagttgatatctgctctattcccatatgaacgtcgagaa
ggatggtctttcgagcgtggtgaagaaattggagaatggcttagaacagaagcagtgaag
tctgttccagacgatagaagtgcggatacatcttcaaatggtgtttggaatcaactctgt
cttggagacatcgataaagcttttcaaattgcgattgataataatcagccacagcttgct
acgatgcttcagacttctgctgtgtgcccagaagctactgttcattgctttaaagcacaa
cttgacaactggaagaaatgcgaaactcttcatttgattccgaaggaaactctcaaatgc
tatgttctgatgtcaggactatcacactacgaatgggatcaagacggaaagaatcattcg
atcaactgtcttgatggactcaattggattcaagcactcggtttgcatgtctggtatctt
cgtgcatggactggtctagaagaatcttacgatgcttatcagaaagatgtcaatgctggc
cgtgccgcttctaatcgtggagatctgcccggagaactcatcaaattggcatgtgaatca
cagcactcagtggaagttgtacttgactgtgcagctggagaaaatcccaacgattatttc
cttcaatggcacgtatggagcttgctctattcggttggataccgtacaatgtcaaagact
tcggaaacaagacttcacagaaactattcatctcaattggaagcatcaagtctctcaaaa
tatgcattgtttgttttgcagcacattgatgatgatgaagaaagatcaacagcagttcgt
tccctcctcgaccgtattgctcgtttcaccgacaatgatatgtttgattctatttccgaa
cagttcgatattccttcggaatggattgctgatgctcaattctcaattgcaaagtcagtc
gatgattctacccaacttttcgaattggctgtggctgcaaagaactatctggaaatttgt
cgcttatttgtggatgatattgcaccaactgcagttgtagctggagatcatgacgctctc
aaagcagcatgcgcgatggttcgtcctttcgaaaatcagattcccgagtggggtgcgact
ggaatggtctacactgattattgccgattgatcaatttgatcgaaaatgatgcggaagaa
gaactcttacaggacgtgcttgaaagtctggaaactcgtctacatgctcctacaatcagc
aagaacagtcttcaaaagctctctcttcaaacaattggacgtgttttgttcgagtaccgt
gctgataagaatacacttccagagtggacaaagcttctcggacatcggcaaatgtttaag
atcttccgtgatcgttcgtcttggggaatcgaaagattcacaattgaatttgactag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (81)   
   KEGG ORTHOLOGY (1)   
   RefGene (76)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (4)   
   Pfam (4)   
All databases (96)   

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