KEGG   Canis lupus familiaris (dog): 612801
Entry
612801            CDS       T01007                                 
Symbol
DDX50
Name
(RefSeq) ATP-dependent RNA helicase DDX50 isoform X2
  KO
K13183  ATP-dependent RNA helicase DDX50 [EC:5.6.2.7]
Organism
cfa  Canis lupus familiaris (dog)
Brite
KEGG Orthology (KO) [BR:cfa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cfa03041]
    612801 (DDX50)
Spliceosome [BR:cfa03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    612801 (DDX50)
SSDB
Motif
Pfam: DEAD Helicase_C GUCT ResIII CMS1 ERCC3_RAD25_C AAA_30 SecA_DEAD
Other DBs
NCBI-GeneID: 612801
NCBI-ProteinID: XP_005619016
Ensembl: ENSCAFG00000013776
VGNC: 39863
Position
4:20203664..20233018
AA seq 673 aa
MKEKLNGDTEEGCNNRLSDEFSKSHKSRRKDLSNGDIDEYEKKSKRVSSLDSSTHKSSDN
KLEETLTREQKEGAFSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTG
TGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFY
GGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQV
EDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEH
LAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQ
SQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGR
TGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDF
FRPSAQRLIEEKGAVDALAAALAHISGASSFEPRSLITSDKGFVTMTLESPEEIQDVSCA
WKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQAEWHDSDWILSLPAKLPEI
EEYYDGNTSSNSRQRSGWSSGRAGRSGRSGGRSGGRSGRQSRQGSRSGSRQDGRRRSGNR
NRSRSGGHKRSFD
NT seq 2022 nt   +upstreamnt  +downstreamnt
atgaaagagaagttaaatggagacactgaagaaggatgtaataatagactttcagatgaa
ttttctaaatctcataagtcaagaagaaaagatctgtcaaatggagatattgatgaatat
gaaaaaaaatcaaagcgagtgtcatccttagatagttctactcataaatcaagtgataat
aaactagaggagaccctaacacgtgaacagaaagaaggagccttctccaatttccctatt
tctgaagagacaataaagcttctaaaaggtcgaggggtatcatatctctttcctattcaa
gttaagacctttggtcctgtatatgaaggaaaagatttaattgctcaagcacggacagga
acagggaagacattttcttttgccatccccttgattgaaagactccaaagaaatcaagag
acaattaaaaaaagccgctcaccaaaggttcttgttttggctcctacaagggaactggca
aaccaagtagccaaagacttcaaagatatcactaggaaactcagtgtggcatgtttttat
ggtggaacatcctatcaaagccaaattaatcatattcgaaatggtattgacatcttggtg
gggactcctggtcgtatcaaagaccatctgcagagcggccgattagatctttctaaactg
cgccatgttgtgcttgatgaagtggatcaaatgttagatttaggttttgctgaacaagtt
gaagatattatccatgaatcctacaaaactgattctgaagacaatcctcagactttactt
ttttctgcaacttgcccacagtgggtatacaaagttgcaaaaaaatacatgaaatccaga
tacgaacaggttgaccttgttggaaaaatgactcaaaaggctgcaactactgtggaacat
ttggccatccagtgccattggtctcagaggccagcagttattggagacgttcttcaagtc
tacagtgggtctgaagggcgggctattattttctgtgagaccaaaaagaatgtaactgaa
atggccatgaatccacacataaaacagaatgcccagtgtttacatggagacattgcacag
tcacaaagagaaattacactgaaaggcttcagagaaggtagttttaaagttttggtggca
accaatgtggctgctcgtggtttggacattcctgaggttgacctagtgattcaaagttct
cctccccaggatgttgagtcctatattcatcgttctggacgcacaggtagagctggccgg
acagggatttgcatatgtttttatcaaccaagagaaagaggtcaactaagatatgtggag
caaaaagcaggaattacttttaaacgtgtaggtgttccttctacaatggatttagttaaa
tctaaaagcatggatgccatcaggtctctggcttccgtttcttatgctgctgttgatttt
ttccgaccatcagctcagagactgatagaagagaaaggggcagtggatgcattggctgca
gcattagcccacatctctggtgcatcaagttttgaaccacgatctttgatcacctctgat
aagggatttgtcaccatgactctggaaagcccagaagaaatacaggatgtcagctgtgca
tggaaagaacttaacagaaagctgagtagtaatgctgtgtcccaaattaccagaatgtgc
ctcctaaaaggaaatatgggtgtttgttttgatgttcccacaactgagtcagaaaggtta
caggcagagtggcatgattcagactggatactttcattgccagccaaattacctgaaatt
gaagaatattatgatggaaacacatcttctaactccaggcagaggagtggctggtcaagt
ggccgggcgggccgatcaggccggtcaggtggtcgatctggtggccggtccggtagacag
agtcgacagggaagtcggtcaggaagtcgacaagatggtagaagacgaagtgggaataga
aatcgatcaagaagcgggggccacaaacggagttttgactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (25)   
   RefSeq(pep) (25)   
DNA sequence (25)   
   RefSeq(nuc) (25)   
Protein domain (8)   
   Pfam (8)   
All databases (69)   

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