KEGG   Cellulomonas flavigena: Cfla_2284
Entry
Cfla_2284         CDS       T01230                                 
Name
(GenBank) ribonuclease, Rne/Rng family
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
cfl  Cellulomonas flavigena
Pathway
cfl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cfl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Cfla_2284
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cfl03019]
    Cfla_2284
   03009 Ribosome biogenesis [BR:cfl03009]
    Cfla_2284
Enzymes [BR:cfl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     Cfla_2284
Messenger RNA biogenesis [BR:cfl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Cfla_2284
Ribosome biogenesis [BR:cfl03009]
 Prokaryotic type
  rRNA processing factors
   Cfla_2284
SSDB
Motif
Pfam: RNase_E_G DnaJ_CXXCXGXG DUF5351
Other DBs
NCBI-ProteinID: ADG75175
UniProt: D5UGS7
Position
complement(2551698..2555051)
AA seq 1117 aa
MSPVNSTENDPTTAPDASGAAGAAPRKRRRRVVRDVVTPAPSADPGELVGAAAPAPAEPG
PVDAVAATAQPAPEQPAAEPAPTRARRSRRVTRTVVLDDTAVVAPADAQDAPAVEGTTPD
AVAEEPVGEAAADGTADVAPADEAAADDPAAAEPVTDAAAAEPVADAAAAEPVADEDAAP
APRRRRPSRRGGRGRSAQDTADQPEASTSTESPAAPEVPAASESPRVDAPLDVLAELGPV
RTGEESPGRARLATTALLFQAPEAPVRARRRRAQASTGSPQEISDAARTDGRSEEPTDET
PEVPVETAADETTGRSRRRRGGRGRKAVPEETAEREDDDESTGAPQGDAADVEDDGLTEA
APDGADDADDADEGDDGSSPRRRRRRGGRGRRGRADAGGDESADAAAGEDDRTEVESDTD
EQGEDAGDEDGVGSSRRRRRRRRGSRGEAAEEPRRRSSGDEVTALRGSTRLEAKRQRRRE
GRDAGRRRQVITEAEFLARRESVERAMVVREIGGRTQIAVLEDGVLVEHYVSNQAQASMV
GNVYLGRVQNVLPSMEAAFVDVGKGRNAVLYAGEVNWDAAGLDGGQPRRIEQALKSGDSV
LVQVTKDPIGHKGARLTSQITLAGRYLVYVPGGGMTGISRKLPDTERSRLKKILRDLVPD
SAGVIVRTAAEGASEEELRADVARLQGQWEAIEKKRRTANAPALLQGEPDMAIRVVRDIF
NDDFSSLVVQGDDAWSTISTYVGELAPDLAARVEKWTGTQDVFSVHRVDEQLAKGMDRKV
WLPSGGSLVIDRTEAMTVVDVNTGKFTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGI
IVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSE
TCEHCHGRGFIVHADPVGKGGRPEQHAPPAPEAGESKRSRRKRAEASTAAVHPAVPVLPE
AREAVKATLATIAAAAAHAHDHDHDHDHAAPVRSDEPAADTAGPGAAGSDAAAPPAGTPA
PVTDADEAADVAAAPAAAPAAGGRKPRTRGRRALGTLDVLAELEGVAHADEASPDQPAAV
ESDAPLELHAVAPELFEDGDGEPGPAAQEGDPVPDEG
NT seq 3354 nt   +upstreamnt  +downstreamnt
ttgtctcccgtgaacagcaccgagaacgaccccacgaccgcaccggacgcgtccggcgcc
gcgggggcggccccgaggaagcgccgccgtcgggtggtgcgggacgtggtgaccccggcg
ccgagcgcggatcccggggagctcgtcggcgcggctgcccccgcacccgccgagccgggg
cccgtcgacgccgtcgcggccaccgcgcagccggcgcccgagcagcccgcggccgagccg
gcgccgacccgtgcgcgccggtcgcggcgcgtgacccgtacggtcgtgctcgacgacacc
gcagtcgtggcgcccgccgacgcacaggacgcgcccgcggtcgagggcacgacaccggac
gcggtcgccgaggagccggtgggcgaggcggccgccgacgggacggccgacgtggcccct
gccgacgaggctgcagccgacgaccccgccgccgccgagccggtcaccgacgcggccgcc
gccgagccggtcgccgacgcggccgccgccgagccggtcgccgacgaggacgccgccccg
gcgccgcgtcgccgacgaccgagccgccggggcggccgtggtcggtccgcccaggacacc
gccgaccagcccgaggcctccacgagcacggagagcccggcagcccccgaggtccccgcg
gcgtccgagagcccccgcgtcgacgcgccgctcgacgtgctcgccgagctcggacccgtc
cgcacgggtgaggagtcgccgggccgcgcgcgtctggccacgacggcgctgctcttccag
gcgcccgaggcgccggtgcgcgcgcggcggcgtcgtgcgcaggcatccacgggttccccc
caggagatctccgacgccgcgcgcaccgacgggcggagcgaggagccgacggacgagacg
cccgaggtcccggtcgagaccgcagccgacgagaccacggggcgttcgcgccggcggcgc
ggcgggcgggggcgcaaggccgtgcccgaggagacggcggagcgcgaggacgacgacgag
agcaccggcgccccgcagggggacgcggccgacgtcgaggacgacggcctgaccgaggcc
gcacccgacggcgcggacgacgcggacgacgcggacgagggcgacgacggctcgtcgccg
cgtcgtcgtcgtcgccgcggcggccgcggtcggcgggggcgcgccgacgcgggtggcgac
gagagcgccgacgccgcggcgggcgaggacgatcggaccgaggtcgagagcgacaccgac
gagcagggcgaggacgcgggcgacgaggacggcgtcggttcgagccgtcgccgccgtcgt
cgccgtcgcggctcccgcggcgaggccgccgaggagccgcgtcgccgctcgtccggcgac
gaggtcacggccctgcgagggtcgacacgcctggaggccaagcgccagcggcgtcgcgag
ggtcgtgacgcaggacggcgccggcaggtcatcaccgaggcggagttcctcgcgcgtcgc
gagtcggtcgagcgcgcgatggtcgtgcgcgagatcggcggtcgcacgcagatcgccgtc
ctcgaggacggcgtgctcgtcgagcactacgtgtcgaaccaggcgcaggcctcgatggtc
ggcaacgtgtacctcggccgggtgcagaacgtgctgcccagcatggaggcggcgttcgtc
gacgtcggcaagggccgcaacgccgtgctgtacgcgggtgaggtgaactgggacgcggcc
ggcctcgacggcggccagccccggcggatcgagcaggccctgaagtccggcgactccgtg
ctggtccaggtcaccaaggacccgatcggccacaagggcgcacgcctgaccagccagatc
acgctcgccggccgctacctcgtctacgtccccggtggcggcatgacgggcatcagccgc
aagctgcccgacaccgagcgctcgcgcctgaagaagatcctgcgtgacctcgtccccgac
tcggccggcgtcatcgtgcgcaccgcggccgagggtgccagcgaggaggagctgcgcgcc
gacgtcgcgcgcctgcagggccagtgggaggcgatcgagaagaagcgccggaccgccaac
gccccggcgctcctgcagggcgagcccgacatggcgatccgcgtggtccgcgacatcttc
aacgacgacttctcgtcgctggtcgtgcagggcgacgacgcgtggtcgacgatctcgacg
tacgtcggcgagctcgcgcccgacctcgccgcacgcgtcgagaagtggaccggcacgcag
gacgtcttctcggtgcaccgtgtcgacgagcagctcgccaagggcatggaccgcaaggtc
tggctcccgtcgggtgggtcgctggtcatcgaccggaccgaggcgatgacggtcgtcgac
gtcaacaccgggaagttcacgggcgccggcggcactctcgaggagacggtcacccgcaac
aacctcgaggcggccgaggagatcgtccgccagctccggctgcgcgacatcggcggcatc
atcgtcatcgacttcatcgacatggtgctcgagtcgaaccgcgacctcgtgctgcgccgg
ctcgtcgagtgcctgggccgcgaccgcaccaagcaccaggtcgccgaggtcacgtcgctc
ggcctggtccagatgacccgcaagcgcgtgggccaggggctggtcgaggcgttcagcgag
acgtgcgagcactgccacggtcgcggcttcatcgtccacgccgacccggtcggcaagggc
gggcgccccgagcagcacgccccgcccgcgccggaggccggggagtcgaagcggtcgcgc
cgcaagcgtgccgaggcgtcgaccgcggccgtgcacccggcggtcccggtgctccccgag
gcgcgcgaggccgtcaaggccacgctcgcgacgatcgccgccgctgccgcccacgcgcac
gaccacgaccacgaccacgaccacgctgccccggtgcgctcggacgagcccgcggccgac
accgccgggcccggcgccgcggggtccgacgccgccgcgcctcccgcggggacgccggcg
ccggtcacggacgccgacgaggccgctgacgtcgcggcggcccccgccgcggccccggcg
gccggcggtcgcaagccccgcacccgcggccggcgcgcgctcgggacgctcgacgtgctc
gccgagctcgagggcgtcgcgcacgcggacgaggcgtccccggaccagcccgcggcggtc
gagtccgacgcgccgctcgagctgcacgcggtcgcacccgagctgttcgaggacggcgac
ggcgagcccggtcctgcggcgcaggagggcgacccggtgcccgacgaggggtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (62)   
   KEGG ORTHOLOGY (1)   
   RefGene (59)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (73)   

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