KEGG   Camponotus floridanus (Florida carpenter ant): 105249020
Entry
105249020         CDS       T03919                                 
Name
(RefSeq) putative U5 small nuclear ribonucleoprotein 200 kDa helicase
  KO
K12854  pre-mRNA-splicing helicase BRR2 [EC:5.6.2.6]
Organism
cfo  Camponotus floridanus (Florida carpenter ant)
Pathway
cfo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cfo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105249020
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cfo03041]
    105249020
Enzymes [BR:cfo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     105249020
Spliceosome [BR:cfo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    105249020
 Complex C
   U5 SnRNP specific factors
    105249020
SSDB
Motif
Pfam: Sec63 DEAD Helicase_PWI ResIII Helicase_C BRR2_plug AAA_22 AAA_30 AAA_19 AAA_16 HTH_61 nSTAND3 PhoH SWI2_SNF2 DnaB_C T2SSE
Other DBs
NCBI-GeneID: 105249020
NCBI-ProteinID: XP_011252452
UniProt: E2A6Q4
Position
Unknown
AA seq 2133 aa
MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVMSLVGKLDGTRMGDRAQRTK
PGKAEERKVKRQKRDEAQYDFARMKGATLLSEGVDEMVGIVYRPKTQETRQTYEVLLSFI
QEALGDQPRDILCGAADEVLAVLKNDRLKEKEKKKETELLLGLLAEERFALLVNLGKKIT
DFGNDEKSTTNDENIDETYGINVQFEESSEEDDEDVYGEVRENDDEGDEGEEANDDRAIH
AENLGGTEEMKKEKPLHPLDIDAYWLQRRLSRIYDDAMVSQARAAEVLAVLKDAADDREC
ENQLVLLLGYDCFDFIKQLKKYRHTVAYCTMLASSQSESERQKIRNKMNDEPVLAKILRQ
LDTGKGEDDADETMEARSQRKRREENEDTGGPGGQVQGTRNLIDLDDLIFAQGSHFMANK
RCQLPDGSFRKQRKGYEEVHVPALKPKPFAENEKLHPIEQLPKYVQPAFEGFKTLNRIQS
RLYQTALESDENLLLCAPTGAGKTNVALLCMMREIGKHINADGTINADEFKVIYVAPMRS
LVQEMVGNFRKRLSTYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGEKTFT
SLVRLIIIDEIHLLHDERGPVLEALVARTIRNIETTQEDVRLVGLSATLPNYQDVAAFLR
IKPESGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVLIFVH
SRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAEQVKNQELKDLLPYGFAIHH
AGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELGA
LDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQLISKMSDMLNAEVV
LGTIQNIRDAVTWLGYTYLYIRMLRCPNLYGISHDKLKQDSLLELHRADLIHSAAVGLDR
SGLIKYDRKSGNFQATELGRIASHYYCTHDTMSTYNQLLKRTLSEIELFRVFSLSSEFKN
INVREEEKLELQKLMERVPIPVKESIEEPSAKVNVLLQAYISQLKLEGFALMSDMVFVTQ
SASRLMRAIFEIVLFRGWAQLADKCLSLCKMIDRRMWQSMSPLRQFRKMPEEIVKKIEKK
NFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLGLSTHIQPITRSTLRVVLTITP
DFQWDEKIHGMSEAFWILVEDVDSEVILHHEYFLLKAKYAADEHIIKFFVPVFEPLPPQY
FLRMVSDRWIGAETQLPVSFRHLILPEKNLPPTELLDLQALPITALRNTKFENIYSEFPQ
FNPIQTQVFNAVYNSDDNVFVGAPTGSGKTTIAEFAVLRLLTQNSEGRCVYMVSKEALAE
LVYDDWAKKFGQQLGRKVVLLTGETGTDLKLLAKGQIIITTADKWDVLSRRWKQRKNVQN
IQLFIVDELQLIGGEEGPVLEVACSRARYISSQLDKPTRIIALSASLGDAKDAAQWLGAP
AAATFNFHPSVRPVPLELHVQGINVTHNASRLAAMAKPVYNAILRHAAHKPVIIFVPTRR
QARLTAIDLLTFTAAEGQPSKFFHAEEADIKPFLDRMVDKTLKETLSQGVAYLHEGLSAD
DRRLVERLFDSGAIQVAVATRDLCWGLSINSHLVVVMDTQCYNGKTHAYEDYPITDVLQM
VARANRPLEDEDAKCVLLCQSSKKDFFKKFLNEPLPVESHLDRRLHDHFNAEIVTKTIEN
KQDAVDYLTWTFLYRRLTQNPNYYGLQGVTHRHLSDHLSELVESTLTDLEQAKCVAVEDE
MDTLPLNLGMIAAYYYINYATIELFSLSLNNKTKIRGLLEIISAAAEYESVPVRQREENL
LRSLAARLPHAPQATRMADPHVKAQLLLQAHLSRIQLGPELQKDTELVLGKAVRLIQACV
DVLSSSGWLAPAVAAMELAQMVTQAMWSKDSYLKQLPHFTAETIKRCTDKGVETVFDVME
LEDDDRNRLLQLTDAQMADVAKFCNRYPNIEMSYEVQDKDKLRSGGTVNVIVQLEREDEV
TGPVVAPFFPQKREEGWWVVIGDPKSNSLLSIKRLTLQQKAKIKLDFVAPAPGQHSYTLY
FMSDAYLGCDQEYKFTISVGEYESDASSGSDSD
NT seq 6402 nt   +upstreamnt  +downstreamnt
atggcggatgctgcggctcgtcaattacaatacgaatataaagcgaactctaatcttgtt
ttacaagctgacgtccggttaatagagagacgtagtcgagatgaagctactggtgaagtt
atgtcccttgtgggaaaactggatggtacacgcatgggtgacagagcccagcgcaccaag
ccaggaaaagcagaggaaagaaaagtcaaacgtcaaaaacgtgatgaagcacagtatgac
tttgcacgtatgaaaggagcaacattactgtccgaaggtgtggatgaaatggttggtatt
gtatatcgtccaaaaacacaagagacacgtcaaacttatgaggtattactcagttttata
caagaagctttaggtgatcaaccacgcgatatcctttgtggcgcagccgatgaagtactg
gctgtgttaaagaatgataggctcaaagagaaagagaagaaaaaagagacagaactttta
cttggtttattagcagaagaaagatttgctctgcttgtcaaccttggaaaaaaaatcaca
gattttggcaatgatgaaaaaagtacaacaaacgatgaaaatattgatgaaacatatgga
attaatgtacagtttgaagagagtagcgaagaggatgatgaggatgtgtatggagaagtc
agagaaaatgacgacgaaggagacgaaggtgaagaagctaatgacgacagggctattcat
gcagaaaatttgggtggtacagaagaaatgaagaaagaaaaaccattacatccattagat
atagatgcatattggttacaaagaagattaagtagaatatatgatgatgctatggtttcg
caagcgagagctgctgaagtattagccgttttgaaggatgctgcagatgatcgcgaatgc
gaaaatcagcttgtgttactgttgggctatgattgcttcgactttatcaaacaacttaaa
aagtataggcatacagttgcatactgtacaatgttggcctcatcgcagtctgaatcagaa
agacaaaaaattcgtaacaagatgaatgatgagccagtgctggcgaaaatcttacgacaa
ttagacacaggtaaaggtgaagatgatgccgacgagacaatggaagcgagatcgcagcgc
aagagacgagaagagaacgaagacacaggaggtcctggaggacaggttcaaggtacaaga
aatttgatagatttggacgatctaatattcgctcagggaagccactttatggcgaataaa
cgttgccagctacctgatggcagttttcgaaaacagcgaaaaggatacgaagaagttcac
gttcctgccttaaagccgaaaccgtttgcggaaaatgagaagttacatccgatcgaacaa
ttgcctaaatatgtgcaacctgctttcgaaggtttcaagacattgaatcgcatacagagt
cgtttgtatcaaacggctttggaaagtgacgaaaatttgttattgtgcgctccaacagga
gcgggtaaaactaacgtagctctattatgcatgatgcgagaaatcggaaagcatataaat
gccgatggtacgattaatgcggatgaattcaaagtcatttacgtcgctccgatgcgttca
ttagtacaggaaatggttggcaattttcgtaaacgattgtcaacgtataatctgacagtc
tccgagttgacaggcgatcatcagttaacgcgagagcaaatcgctgccactcaagtaata
gtatgtaccccggaaaagtgggacatcataacgagaaaaggtggtgaaaaaacttttaca
tcgctagtacggttgattattatcgacgagattcacctgttgcatgatgagagaggtcct
gttctagaagcattagttgcgagaacaatacgaaatattgagactacccaagaggatgtg
cgattagttggtttatcagccacgttacccaattatcaagacgtagcggcattcttgcga
atcaaaccggaatcaggactattctatttcgacaacagcttccggcctgtggctctggaa
cagcagtatatcggcgtcaccgaaaagaaagcgctaaaacgctttcaagtgatgaatgag
atcgtctatgaaaaaacaatggaacacgccggcagaaatcaggttttgatattcgtgcac
tcgcgcaaggaaaccggaaaaacggcacgcgctattagagacatgtgcctggaaaaagac
actctaggtcaatttcttagagagggttccgcgtcgatggaagttttgagaacggaagcg
gagcaagtgaaaaatcaagaactcaaggatttgttgccgtacggattcgcgattcatcac
gctggtatgacccgtgtggatcgcacattggtggaggatctcttcgccgacagacatatt
caagttctcgtatctactgcgactttagcttggggtgttaatttgccggctcatacggtc
atcattaagggaactcaagtttataatccggaaaaaggcagatgggtagagctgggcgct
cttgatgtactgcaaatgttaggaagagctggtcgacctcaatatgataccaagggcgaa
ggtattcttatcacaaatcacagcgagttacagtattatctatcgcttctaaatcaacaa
ctacccattgaatcgcaattaatcagcaagatgtctgatatgttaaatgcggaggtagtg
ctaggtacaatccagaatatcagagatgcggttacctggctcggttatacttatctttac
atcagaatgcttcgttgcccaaatctatatgggataagtcacgacaaattgaagcaggat
agtttattagagctgcatagagctgatctgattcattcggctgcagtcggattagatcgc
agcggtttaatcaaatacgatcgcaagtccggtaattttcaggcaaccgaattgggcaga
atagcgtctcattattattgcactcacgacacgatgtctacgtacaatcagttgctaaaa
cgcacattgagcgagatagagttgttccgcgtattttcgctgtcgagcgaattcaagaat
ataaatgtcagggaggaagaaaaattagagctacagaaattaatggagagagtgccaata
cctgtgaaagagagcatcgaagaaccaagcgcgaaggtaaatgtacttttacaggcatat
atctcacaactgaagctcgaaggattcgctctcatgtccgatatggtatttgtgacgcaa
tccgcctcacgtctgatgcgagccatttttgaaatagttctgtttcgcggttgggcgcag
ttggcagataaatgtctctctttatgcaagatgatcgatcgtaggatgtggcaatcgatg
tcaccgctcaggcaattccgcaagatgccggaagagattgtgaagaagatcgagaagaag
aatttcccgtgggagagactgtacgatctgggtcccaacgagatcggagaattgattcgt
gtaccgaaattaggcaagaccattcacaaatacgttcaccaatttccgaagctcggcttg
tcgacacatatccagcctatcacgcgttccaccttgcgagtcgtgctaactattacacca
gacttccaatgggatgagaaaattcacggtatgtcggaagcgttttggatcctggtcgaa
gatgtcgattcagaggtgatactgcatcacgagtactttttattaaaagccaaatacgcg
gctgacgagcatatcatcaagtttttcgtcccggttttcgagcctctaccgccgcaatat
ttcttacgtatggtatctgaccggtggatcggcgcagagacgcaattgcctgtaagtttt
cgacatttgatactacctgagaagaatctaccacccacggaattattggatctgcaagcg
ctaccaatcacggcactgcgaaatacgaagtttgaaaacatctactccgaattcccgcaa
tttaatccgattcaaacacaggtgttcaacgcggtttacaattccgatgataatgtattt
gtcggagcgcccacaggttctggaaagacaaccatcgcggaatttgcagtattgagattg
ctgacgcaaaactcagaaggcagatgcgtatatatggtgagtaaagaagcattggccgaa
ttggtctacgacgactgggcgaagaaattcggccaacaattaggaaggaaagtcgtcctt
ctgacgggcgaaacgggaacagatctgaagctattggccaagggacagattattatcacc
acggcggataaatgggacgtgctgtcacgcagatggaaacaacggaagaacgtgcagaac
atccagttattcatcgtagatgagctacagttgattggtggcgaagaaggtcccgtgctg
gaggtcgcgtgctcgcgagcacgttacatctcttcgcagctcgacaaacccaccagaata
atagcgttgtcggcttcgttgggtgacgctaaagacgccgcgcagtggctgggtgcacca
gcagcggctactttcaattttcatccttctgtgcgaccggtgccgctggagttgcatgtc
caaggtataaacgtcactcacaatgcatcaagattggccgctatggcgaaaccagtatat
aatgcaatcctccggcatgcggcacataaaccggtaatcatattcgtgcccactcgtcga
caagcgagattaacggctatcgacttgctaacgttcacggcagctgaaggtcaaccgtcg
aaattcttccatgcggaagaagccgacatcaaaccgttcctcgatcggatggtggataaa
acattgaaggagactctatcgcaaggtgtggcttatcttcacgagggcttatcggccgat
gatcgtcgtttggtcgaacgattgttcgacagcggcgctattcaagtggcagtagctacg
agggatctctgctggggtttatccatcaattctcacttggttgtagtcatggatacacag
tgttacaacggtaaaacacatgcctatgaagattatccgatcacagacgttttgcagatg
gtggcgcgagctaatcgtccgctggaggatgaggatgccaagtgcgtgctcctgtgtcag
agctcgaagaaagatttcttcaagaagtttctcaacgaaccattaccggtggagagtcat
ctggatcggcgattacacgatcacttcaacgcggagattgtgacaaagactatcgaaaac
aaacaggatgcagtcgattatctcacgtggaccttcctatatcgacgacttacccagaat
cccaattattacggcctgcagggcgttacacatcggcatctctcagatcatctatccgag
ctagtcgagagtacattgaccgatcttgaacaagctaaatgtgtcgccgtggaggatgaa
atggacaccctgccgctcaatttaggaatgatcgccgcctactactacatcaattacgcc
actatcgaattgttcagtctgtctctcaacaacaagacgaagattagaggcttgctagag
attatttcggcagccgccgagtacgagagcgttccagtgcgacagagggaagaaaattta
ttgagaagtctagccgcgcgtttacctcatgcaccacaagctaccagaatggctgatcct
cacgtaaaagcacaattattgttacaggctcatttgtcgaggatacaattgggtccagag
ttgcaaaaggacaccgagctggtgctgggcaaagccgtaaggctgatacaagcttgcgtc
gacgtgttgagctcctccggatggttagcacccgccgttgctgctatggaattggcgcag
atggtgacgcaggcaatgtggtccaaagattcctacctgaagcagttgccgcactttaca
gctgagaccataaaacgctgcaccgacaagggcgtggaaactgtattcgacgtaatggag
ctcgaggatgatgaccgaaatcggctgttgcagctgacggacgcgcaaatggcggatgtc
gccaagttctgtaatcgttatcccaacatcgagatgtcgtacgaggtacaagacaaggat
aagctacgcagtggcggcacggtaaatgtgatcgtgcaattggaacgagaggacgaggtc
accgggccagtggtggcgccatttttcccgcagaaacgcgaagagggctggtgggtggtg
atcggcgacccgaagagcaactccctactatctatcaaacggctaacgttgcagcagaag
gcaaagatcaaactggattttgtcgccccggctcctggccagcattcctacactttgtac
tttatgagtgacgcttatctcggctgcgatcaagaatataaatttaccatcagtgtcgga
gagtatgaatcggatgccagttccggttccgattccgattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (16)   
   Pfam (16)   
All databases (28)   

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