KEGG   Cystobacter fuscus: CYFUS_003751
Entry
CYFUS_003751      CDS       T05065                                 
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
cfus  Cystobacter fuscus
Pathway
cfus03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cfus00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CYFUS_003751
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cfus03019]
    CYFUS_003751
   03016 Transfer RNA biogenesis [BR:cfus03016]
    CYFUS_003751
Enzymes [BR:cfus01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     CYFUS_003751
Messenger RNA biogenesis [BR:cfus03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CYFUS_003751
Transfer RNA biogenesis [BR:cfus03016]
 Prokaryotic type
  tRNA degradation factors
   CYFUS_003751
SSDB
Motif
Pfam: RNB OB_RNB S1 RNase_II_C_S1
Other DBs
NCBI-ProteinID: ATB38317
UniProt: A0A250J4B2
Position
complement(4606458..4608350)
AA seq 630 aa
MDSPTSRTVTGHIDVHHRGHGFLIVRPSNTSEGLSAFIPPPELRHHLADDVVSARITRAE
DGRWRASGLSVVHRPRQELYGEVVVREERVLLQPDRDVGAGAWPLEAEGIEVQPGDAVVA
RIDEDKVRLVRKLAPGVDRSLERLLLRHGLRREFGPEAHAEVPQVLARPLTREGRRDLRE
VPTVTVDAPITRIIDDALSVLPAGGDGALRLFVSIADAAEFIPEGSALDREARERATNVY
LGDTLLPMLPEALAAGSLSLVPGEERLCVTVELRIDPEGRVTSVDVYESLLRSWARLSYT
EVTAYLDQGEVSEPMARVREAMPWLRAAAARLAVARAGRGGIDQTRDEAHFTFDEVTGEV
SGIETERPTSAHALVERFMVAANEAIAGWLVERGLPAPFRVQGEPEPQAVADLDAFALHS
GFAAGLGRTLTPLSLAAFARQLSGVPEEAALRSVMFKALASSRYSVVPAPHFGLAARAYV
HFTSPLRRYADLAVHRALKHYLRGRRDFPHEDPDVERLSLHLNERVRRAQRAEKERHRLL
EARVMAAHVGQEFTGHITRVRSTGLLVQLDQPLVEGLLPLESLPGGPYAPDARETSLVGP
TRDFTLGMPLRVRVAFTEEHPGRVGLALVE
NT seq 1893 nt   +upstreamnt  +downstreamnt
atggactcgcccacttcccgcaccgtcaccggccacatcgacgtccaccaccggggtcat
ggcttcctcatcgtgcggcccagcaacacctccgagggtctctccgccttcatccctccc
ccggagctgaggcaccacctggccgacgacgtcgtctccgcgagaatcacccgcgcggag
gacggccggtggcgcgccagcggcttgtcggtcgtgcaccggccccgccaggagctctat
ggcgaggtggtggtgcgcgaggagcgtgtgctgctccaacccgaccgggacgtgggcgcg
ggcgcctggcccctggaagcggagggcatcgaggtccagcccggcgacgcggtggtggcc
cgcatcgacgaggacaaggtccggttggtgcgcaagctcgcgcccggagtggaccgctcc
ctggagcgcctcctgctgcgccatggcctgcgccgtgagttcggtccggaggcccacgcc
gaggtcccccaggtcctcgcccggccgctcacgcgggagggccggagggatctgcgcgag
gtgcccacggtgaccgtggacgcgcccatcacccgcatcatcgatgacgcgctctccgtg
ctccccgcgggaggggatggcgcgctgcggctgttcgtctccatcgcggacgccgccgag
ttcatccccgagggctccgccctggatcgcgaggctcgcgagcgggccaccaacgtgtac
ctcggggacaccctgctgcccatgctccccgaggcgctggcagcgggctcgctcagcctc
gtgccgggcgaggagcggctgtgcgtcacggtggagctgcgcatcgatccggaaggacgg
gtcacctcggtggatgtctacgagagcctgctgcgctcctgggcgaggctgagctacacc
gaggtgacggcgtacctcgaccagggagaggtgtccgagccgatggcccgggtgcgcgag
gcgatgccgtggttgcgcgcggcggcggcgcggctggcggtggcgcgggcgggacgcggg
ggcatcgaccagacgcgcgacgaggcccacttcaccttcgatgaagtcacgggcgaggtc
tcgggcatcgagaccgagcgacccacttcggcgcatgcgctcgtcgagcgcttcatggtg
gccgccaacgaggccatcgccggctggctcgtcgagcggggccttcccgcccccttccgc
gtccagggagagcccgagccccaggccgtggcggacctggatgccttcgccctccactcg
ggcttcgccgcgggcctgggccgcacgctcaccccgctgtccctcgccgcgttcgcccgg
cagctctccggtgtgcccgaggaggccgcgctgcgctcggtgatgttcaaggcgctcgcc
tcctcgcgctacagcgtggtgcccgccccccatttcggcctcgcggcacgcgcctatgtg
cacttcacctcgccgctgcggcgctacgcggacctcgccgtccaccgcgccctcaagcac
tacctgcgcggccggcgggacttcccgcacgaggatcccgacgtcgagcggctctcgctc
cacctcaacgagcgcgtccggcgcgctcagcgagcggagaaggaacgacaccggctgctg
gaggcacgggtgatggccgcgcacgtgggccaggaattcaccggacacatcacccgggtg
cgctccacggggctgctcgtccagctcgaccagccgctcgtggagggactgcttcccctg
gaatcgcttccgggaggcccctacgccccggatgcccgggagacctcgctcgtggggccc
acgcgtgacttcacgctcgggatgccgcttcgggtgcgcgtggccttcacggaggaacac
ccgggccgcgtcggactggcgctcgtcgagtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (21)   

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