KEGG   Campylobacter fetus subsp. venerealis 97/608: CFV97608_1455
Entry
CFV97608_1455     CDS       T03351                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
cfx  Campylobacter fetus subsp. venerealis 97/608
Pathway
cfx03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cfx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CFV97608_1455 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cfx03021]
    CFV97608_1455 (rpoC)
   03400 DNA repair and recombination proteins [BR:cfx03400]
    CFV97608_1455 (rpoC)
Enzymes [BR:cfx01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CFV97608_1455 (rpoC)
Transcription machinery [BR:cfx03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CFV97608_1455 (rpoC)
DNA repair and recombination proteins [BR:cfx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CFV97608_1455 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 DUF6675
Other DBs
NCBI-ProteinID: AIR81064
Position
complement(1423882..1428408)
AA seq 1508 aa
MSELKPIEIKEDAKPRDFEAFQLRLASPDRIKAWSHGEVKKPETINYRTLKPERDGLFCA
KIFGPIRDYECLCGKYKKMRYKGIKCEKCGVEVTTSKVRRSRMGHIELVTPVAHIWYVNS
LPSRIGTFLGIKMKDLERVLYYEAYIVENPGDAFYDNENSKKVDLYDVLNEEQYVLLEQK
FSESGFKARMGGEVIRDLLASLDLVSILDQLKIEIESTNSEAKKKTIVKRLKVVESFLNS
GNRPEWMMITNLPVLPPDLRPLVSLDGGKFAVSDVNDLYRRVINRNTRLKRLMELDAPEI
IIRNEKRMLQEAVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFS
GRSVIVVGPKLRMDQCGLPKKMALELFKPHLLARLEEKGYATTVKQAKKMIEDKTNEVWE
CLEEVVADHPVMLNRAPTLHKMSIQAFHPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHV
PLSQEAIAECKILMLSSMNILLPASGKAVTVPSQDMVLGIYYLSLEKNEAVGANKIFASV
DEVMIAVEAHYLDLHAKIKTMVEGRTVFTTAGRLIIKSILPNLKENSVPESMWNKVMKKK
DIANLVDYVYKNGGLEVTAGFLDKLKNLGFRYATKAGISISIADIIIPESKYSYVDEAKK
RVREIQNQYGSGLLTDSERYNKIVDIWTDTNNKVAAEMMKLIKTDKSGFNSIYMMADSGA
RGSAAQIRQLAGMRGLMAKPDGSIIETPITSNFREGLNVLEYFISTHGARKGLADTALKT
ANAGYLTRKLIDVAQNVKVTMDDCGTHEGVEITEITENGELIESLEERVLGRVLSDDVID
PITNEILFTEGTLIDEVKARTITDAGIKSVSIRTPITCKASKGVCSKCYGINLGEGKLVK
PGEAVGIISAQSIGEPGTQLTLRTFHIGGTASTEQQDRQVVAQKEGFIRYYNLKTYENNN
KFIVTNRRNAAILLVEPKIKAPFDGEINIEVAHEDINVIIKGKSDEVKYVLRKHDLAKPN
ELAGVSGKVEGKFYIPYIKGDKVKENESIVEVIKEGWNVPNRIPFASEVKVADGDPVTQD
ILSGANGVLKFYILKGDYLERIKNVKKGDMVSEKGLFVVIADDDDREAVRHYIPRNSVIK
FNDSDIVSAKDTIAKPQDGSKLVIAEWDPYSTPVIAEEAGTVAYEDIEPGYSVAEQYDEA
TGESRLVINEYLPSGVKPTIVISTKSGKLIRYQLEPKTAIFVKDGAEVSRADTIAKTPKA
VAKSKDITGGLPRVSELFEARRPKNTAIIAEIDGTIKFDKPLRSKERIIIMAEDGSSAEY
LIDKSRQIQVRDGEFVHAGEKLTDGLVSSHDVLRILGEKALHYYLISEIQQVYRSQGVAI
SDKHIEIIVSQMLRQVKIVDSGHTNFIVGDMVSRRKFREENDRIMKIGGEPAIAEPVLLG
VTRAAIGSDSVISAASFQETTKVLTEASIAAKFDYLEDLKENVILGRMIPVGTGLYQDKK
VKIKINED
NT seq 4527 nt   +upstreamnt  +downstreamnt
atgagtgagttaaaacctattgagataaaagaagatgcaaaaccaagggattttgaagcc
tttcagctaagactcgctagtccagatcgtataaaagcgtggagtcacggtgaagttaaa
aagcctgaaaccattaattatcgcacgttaaaaccggagcgcgacggtctattttgtgct
aagatatttggacctataagggattatgaatgtctgtgcggtaagtataaaaagatgcgc
tataaaggaattaaatgtgaaaagtgcggcgttgaagtaactacttcgaaggttcgtcgc
tcacgcatggggcacattgagcttgttactcctgtagcacatatttggtatgtaaattcg
cttcctagtcgtataggcacttttcttggcataaaaatgaaggatttagaacgtgttctt
tactatgaagcttatatagtagaaaatccgggcgatgcattttatgacaatgaaaatagt
aaaaaagtagatctttatgatgttttaaatgaagagcagtacgtattacttgagcagaaa
tttagtgaaagtggttttaaagctagaatgggcggcgaagttatacgtgatctactcgca
agtttagatttagtatctatacttgatcagttaaagatcgagatagaaagtacaaatagc
gaagcaaagaaaaaaactatagtaaaacgtttaaaagttgttgagagttttttaaattca
ggtaatcgtcctgaatggatgatgataacaaacttgcctgttttaccacctgatttaaga
cctcttgtcagtcttgatggtggtaaatttgcagtttcagatgtaaatgatctgtatcgt
agagttataaatagaaatactcgtttaaaaagactaatggaacttgacgcgccagaaatt
attattcgtaatgaaaaaagaatgcttcaagaagcagttgatgctctgtttgataatggt
aggcgtgcaaatgcagtaaaaggtgcaaataaaagaccgttaaaatctctaagtgaaatt
ataaaaggtaaacagggtcgtttccgtcaaaatctgcttggtaaacgtgtggatttttca
ggacgttcagttatagttgtagggccaaagcttagaatggatcaatgtgggcttcctaaa
aaaatggcacttgagctatttaaacctcatttgttggctcgccttgaagaaaagggatat
gctactactgttaaacaagctaaaaagatgatcgaagataaaacaaatgaagtttgggag
tgccttgaagaggtagttgcagatcatcccgttatgttaaaccgtgctcctactttacat
aaaatgtctattcaggcgtttcatccggttttaatagaaggtaaagctattcagcttcat
cctcttgtttgttcggcgttcaatgcagactttgatggcgaccaaatggctgtgcatgta
ccactttctcaagaggctattgcagagtgtaaaattcttatgttaagttcgatgaatatc
ttacttcctgcgagcggaaaagctgtaacggtaccttctcaagatatggttttgggaatt
tattatttaagtcttgaaaaaaatgaagccgttggagctaataaaatttttgctagtgtc
gatgaggtaatgatagctgttgaagctcactatcttgacttgcacgcaaagataaaaact
atggtagaaggacgcactgtatttacaactgcgggtcgtcttattataaaatcaatactg
ccaaatttaaaagaaaactctgttccagaatctatgtggaataaagttatgaagaaaaag
gatattgctaatttggttgattatgtttataaaaatggcggtcttgaagtaacagccggg
tttttagataagcttaaaaatctaggatttagatacgctacaaaagcagggataagtata
tctatagctgatattatcatacctgagagtaaatatagttatgtagatgaagcaaagaaa
agagttagagaaattcaaaatcaatacggctcaggtttactaactgattcagaaagatac
aacaaaatagttgatatctggacagatactaacaataaagttgcagctgaaatgatgaaa
cttatcaaaacagataaaagtggatttaactctatttatatgatggcagactcgggagca
aggggaagtgcagctcaaattcgtcagcttgctggtatgcgtggacttatggcaaaacct
gatggttcgatcattgagactcctatcacatcaaatttccgtgagggactaaacgtgctc
gagtatttcatctcaactcacggtgctagaaaaggtcttgcagatactgcacttaaaacc
gcaaatgccggatatcttacaagaaagcttatcgatgttgctcaaaacgtaaaagttact
atggatgattgcggtactcacgaaggtgttgagataacagagattactgaaaacggagag
cttatcgaaagcttagaagaaagagtattaggtagagttttaagtgatgacgtaattgat
cctattactaatgaaatcttatttaccgaaggtactcttatagatgaagtaaaagctaga
actatcactgacgctggtataaaatcagtaagcataagaactcctataacttgtaaagca
agtaagggcgtatgctcaaaatgttatggtataaaccttggcgagggtaaattggtaaaa
ccaggagaggccgtgggcatcatctcagctcaatcaatcggcgaacctggtactcagctt
actctaagaacattccacattggcggtactgcttcaacggagcaacaagatcgtcaagta
gtggctcaaaaagagggatttattagatattataatcttaaaacatatgagaataacaat
aaatttatagtaacaaatcgtcgtaatgcagctatattattagttgagccgaagataaaa
gctccgtttgacggagagataaatatagaagtggcacacgaagatataaatgttattata
aaaggcaaaagcgatgaggttaagtatgttttaagaaaacacgatttagccaaaccgaat
gagttagccggagtaagcggtaaagttgaaggtaagttctacataccttatataaaaggt
gataaagtcaaggaaaacgagagtatagtcgaggttataaaagagggttggaatgtgcca
aaccgtattccttttgctagtgaagtaaaagtagctgatggcgatcctgttactcaagat
atattatctggagcaaacggcgtacttaagttttatatattaaaaggcgactatctagag
agaattaaaaacgtcaaaaaaggcgatatggttagcgaaaaaggattatttgttgttatc
gccgatgatgacgatagagaagctgttcgtcactatataccaagaaatagcgttattaaa
tttaatgatagcgatatagtaagcgcaaaagatactatagcaaaaccgcaagatggcagt
aaacttgtaattgccgagtgggatccgtactcaactcctgttatagcagaagaagccggt
acagtcgcttatgaagatatagagcctggatatagcgtagccgagcagtatgatgaagca
accggagaaagtaggcttgttataaacgaatatctaccaagcggagttaagccaactata
gttatatcaactaaaagcggaaaacttattcgttatcagttggagcctaagactgctata
tttgtaaaagatggagcagaggtttctagagccgatactatagctaaaactccaaaagca
gttgcaaaatcaaaagatatcacaggaggtcttcctagggtttcagaattgtttgaagca
aggcgtcctaaaaatacagctattattgcagagattgatggtactatcaaatttgataag
cctcttcgctcaaaagaacgtataataataatggctgaagatggctcaagcgcagagtat
cttatagataaatctcgccaaattcaagtaagagatggtgagtttgtgcatgctggagaa
aaattaaccgacggtttagttagcagccatgacgtattaaggatattaggtgaaaaagca
ttgcactattacttgataagtgaaattcaacaagtttatcgctcacaaggcgttgctata
agtgataaacatatagagattatcgtatctcaaatgctgcgtcaagtaaaaatagtagat
agcggtcacacaaattttatcgtaggcgatatggtaagtagacgtaaatttagagaagaa
aatgatcgtataatgaaaataggtggcgagccagcaattgccgagccagtacttcttggt
gtaacaagagctgctataggaagcgatagtgttatctcagcagcttctttccaagagact
acaaaggttttaacagaagcaagtatcgctgctaaattcgactatcttgaagatctaaaa
gagaacgttattttaggtcgtatgataccagttggtaccggtctttatcaagataaaaaa
gttaagattaaaataaacgaagattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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