KEGG   Cryptococcus gattii: CGB_B1010C
Entry
CGB_B1010C        CDS       T02232                                 
Name
(RefSeq) exosome complex exonuclease rrp4
  KO
K03679  exosome complex component RRP4
Organism
cgi  Cryptococcus gattii
Pathway
cgi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cgi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CGB_B1010C
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cgi03019]
    CGB_B1010C
Messenger RNA biogenesis [BR:cgi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     CGB_B1010C
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     CGB_B1010C
SSDB
Motif
Pfam: RRP4_S1 ECR1_N KH_6 RRP40_S1
Other DBs
NCBI-GeneID: 10188157
NCBI-ProteinID: XP_003192490
UniProt: E6QZX1
Position
B:complement(join(222407..222622,222678..222890,222944..223021,223086..223278,223355..223456,223507..223700))
AA seq 331 aa
MFSIKAVAPSISQAFSESVPSTHRKHQAELDAMDLDEDEFGGAGPSKRSIVSPGEVITSS
KEYMRGHGTYVEESNVVSSVAGTIERVNKLISVRPLHSRYTPEVGDLVIGRIVEVGAQRW
RVDANGRQDAVLMLSSVNLPGGVQRRKIESDALKMREFLAEGDLLVAEVQAFFGDGAMSL
HTRSLKYGKLRNGFLLTVPPQLIRRLKSHFYHVPPPCGPTGVDVILGLNGYVWVSNGTSQ
GRREGGEGFDSEGVYSNQNDEISPEGREAVSLIANIIKALAGEGIPLTETLISESYAWAE
INVPSGSGPFDSETEKKMLNEIVGLEFPEFA
NT seq 996 nt   +upstreamnt  +downstreamnt
atgttcagcataaaagctgtagcaccgtcgattagtcaagcgttctccgaaagcgtaccg
tcaacacatcgcaagcaccaagcggaacttgatgcaatggatctcgatgaagatgagttt
ggtggcgctggacctagcaagaggtctattgttagtcctggagaggttattaccagctcc
aaagagtatatgagaggtcatggaacctatgtcgaggagagcaatgttgtgtcctctgtg
gctggtacgattgagagagtaaacaaactcatttccgtcaggccacttcattcaagatat
acgcccgaagttggagatctggttatcggtcgaatagtagaagtgggcgcgcaacgatgg
cgtgtagatgcgaacggacgtcaagatgctgttctgatgctttcaagtgtcaacttgccg
ggcggtgtacaaaggaggaagattgagtcggacgctttgaagatgagagagtttttggcg
gaaggagatttgcttgttgctgaagttcaggcgttctttggtgatggtgctatgtcgtta
cacacgcgatcattgaagtacggtaaacttcgtaacggctttctcttaaccgtccctcca
caattaatccgccgacttaaatcacatttttaccacgttccgcctccctgtggtcctacg
ggtgtcgacgttatcctcgggttgaacggttacgtgtgggtcagtaacggaacgtcacag
gggcgacgggagggcggtgaagggttcgactcagaaggtgtatatagtaaccagaatgac
gaaatctctccggaaggcagagaggccgtttcgctcattgctaacatcatcaaggctctt
gctggcgagggtattcctcttaccgagactcttatcagtgaatcatacgcatgggcagag
ataaatgtgccatctgggtcaggaccatttgattcagagactgagaagaagatgctcaac
gagattgtcggtttggaatttcccgaatttgcttga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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