KEGG T03361: AR0

Corynebacterium glutamicum ATCC 21831: AR0_05345

Entry

AR0_05345         CDS       T03361

Name

(GenBank) transcription-repair coupling factor

K03723

transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]

Organism

cgj Corynebacterium glutamicum ATCC 21831

Pathway

cgj03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:cgj00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AR0_05345
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cgj03400]
    AR0_05345
Enzymes [BR:cgj01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AR0_05345
DNA repair and recombination proteins [BR:cgj03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      AR0_05345

SSDB

Motif

Pfam:

DEAD TRCF UvrB_inter Helicase_C CarD_TRCF_RID ResIII AAA_22 RecG_dom3_C UB2H IstB_IS21

Other DBs

NCBI-ProteinID:

AIK87453

Position

1105062..1108706

AA seq 1214 aa
MLAGLLKVAATDPKLKGLMSNVGQQHLHITGIDQARPWAIGALAHHAPVLVVTATGREAE
DLTAELKAMMGDKVAWLPSWETLPHERLSPGVDIVGKRAQVLNHLGDLKVVVAAARAFCQ
PVLKDAEGRAPLTLKEGAEFDFSALTTELVFRAYKHVDMVAKRGEFATRGGILDIFPTTL
DYPVRVEFWGDEVSDIRQFSVADQRTIPEITIKSIEIFPARELLITEEVASRAESLISKH
PGNPTLVEMLSRIADSQDVDGMEALIPALTDTPMVPMLELMPENTHVLVIAPEKVRRRIA
DLEATDAEFLMAGWEAAAMGADGPVAAEGLDLEASSYRSYESLEVSASKSDVRWWTFAPP
GMFEASEEATLPLDFEAGPAPRGELPKIDAMMAQLLAHTTGGGRAAFIAPTQGAIKRMVD
RFAEKGIPTHVATPGWEPTPGQVTLYHALSHAGLVFPKVRKHRDGAAMPLVVITETDLTG
NRVGDIAGAKRRPAKRRNKVDPLALEPGDLVVHETHGIGRFVKMTERTISAGDETSRREY
IVLEYAPSKRGQPGDQLYVPMDALDMLSRYVGGEKPTLSKMGGSDWKNAKKKARAAVREI
AGELVELYAKRQSAPGHPFAPDTPWQKEMEDNFPYVETEDQMLAIDAVKEDMEKSVPMDR
VIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHQSTFEERMTGFPVTIKGLS
RFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEHIKA
LRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTYVGPYEDKQVAASIRR
ELLRDGQVFFIHNKVADIEKKAREIRDLVPEARVVVAHGQMSEELLEQTVQGFWDREYDV
LVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTE
MSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVE
AYRALADGKVVDGTVKGPKEIRVDLPVDAHIPEKYINAERLRLEIYRKLAQSESEVDLRL
AVEEMEDRYGPIPEEVERLLAVSRLRHLMREAHLTDIAVQGTRIKVHPVDLADSQQVRLK
RLFPGATYRAAAKAIQLSFPKAGNKVTDPLLRDVDLLQWVANFISNMFNLEEIDVRGPQP
GKPKKKSSVISVSL

NT seq 3645 nt +upstreamnt +downstreamnt
atgctcgcggggctgttgaaggtcgctgcaaccgaccccaagttgaaggggttgatgtcg
aatgtggggcagcagcatctgcatatcactggcattgatcaggctcgtccgtgggcgatt
ggtgcgttggcgcatcatgctccggtgttggtggtgactgctactggccgtgaggctgag
gatctcacggctgagttgaaggcgatgatgggcgataaggtggcgtggcttccgtcgtgg
gagactctgccacatgagcgattgagtccgggtgtggacattgtgggcaagcgtgctcag
gtgctcaatcatctaggcgacctcaaagtcgtggtggctgctgcgcgtgcgttttgccag
ccggtactcaaagatgctgaaggtcgtgcacccctcactcttaaagaaggcgcggagttt
gatttctctgccctgaccactgagctggttttccgtgcgtacaagcatgtcgatatggtg
gccaagcgcggtgagtttgctacccgcggtggcattttggatattttccccaccacattg
gattatccggtgcgtgtggagttttggggcgatgaagtctctgacattaggcagttctct
gtcgccgatcagcgcaccattccagaaatcaccatcaagagcattgagattttcccggca
cgggaattgctcattactgaagaagtggcatcccgcgcggagtctcttatttccaagcat
ccgggcaacccgacgcttgtggagatgctgtcgaggattgcggattcccaagatgttgat
ggcatggaggcgttgattccggcgctgacggatacgccgatggttccgatgctggagctc
atgccggaaaacacccatgtgttggtgattgctccggagaaggtgcgccgacgcattgcg
gatctggaagcaaccgatgctgagtttttgatggctggttgggaagcagctgcgatgggt
gctgacggtccagtggctgcggaaggcctggacttggaagcttctagctatcgcagttat
gaaagtttggaggtttctgcgtcgaaaagcgatgtgcgttggtggactttcgcgccgccg
ggcatgtttgaggcctcggaggaggcgacgctgccgcttgattttgaagccgggccggcg
ccgcgcggtgagctgccgaagatcgatgcgatgatggcgcagctgcttgcgcacacaacc
ggcggtgggcgggctgcgtttatcgcgccgacccaaggtgcgattaagcgcatggtcgat
cgtttcgcggaaaagggcattcccacccatgtggcgaccccgggttgggagccaacgcct
ggtcaagtcaccctttatcatgcgctgagccatgctggcctggtgtttccgaaggtgcgt
aaacaccgcgatggcgctgcgatgccgttggtggttataacagaaaccgatctgactggt
aaccgtgttggcgatattgcaggggcgaaacgtcgacctgcaaaacgccgcaacaaggtg
gatcctttggcgctggagccaggggatttggtggttcatgaaacccacggcattggtcgt
tttgtgaagatgactgaacgaaccatttctgcgggtgatgagacctcgcgccgtgaatac
attgtgctggagtacgcgccatctaagcgcggacagcccggcgatcagctgtatgtgccg
atggatgcgctggatatgctcagccgctacgtcggtggcgagaagccgacgctgtccaaa
atgggtggttctgactggaagaacgccaagaagaaggctcgcgctgccgtgcgtgaaatc
gccggtgagctggtagaactctacgctaagcgccaatccgcgccgggtcacccgtttgcg
ccggatacgccgtggcaaaaagagatggaagataacttcccctacgttgagactgaagac
cagatgttggcgatcgatgcggtcaaggaggatatggagaaaagtgtccccatggaccgc
gtcatcatcggcgatgtgggttatggcaagacggaagtggcggtgcgcgcggcgttcaag
gctgtgcaagacggcaagcaggtagccgttctggtgcctaccacgttgcttgcgcagcag
caccagtccacgtttgaagagcgtatgactggtttccctgtcaccatcaagggattgtca
cgctttacttcgcctgcggaatcgcgggagattctctccggtttggcggcgggctcagtg
gatatcgtcatcggtactcaccgtttgctgcagactggcgtgcagtggaaaaacctaggg
cttgtcatcgtggatgaggagcagcgtttcggcgtggaacacaaggagcacatcaaggct
ctgcgtactcacgtggatgtgctgaccatgtccgcgaccccgattccgcgcaccctggaa
atgtccatggccggtatccgtgagatgaccaccatgctcaccccgccggaagatcgccac
ccaattcttacctatgtgggaccgtatgaagacaagcaggtcgcggcatcaattcgccgc
gagttgctgcgcgatggccaggtctttttcatccacaacaaggtggcagatattgagaag
aaggcccgcgagatccgcgatctagttcccgaagcccgagtggttgttgcccacggccag
atgagtgaagagctgctggaacaaaccgttcaaggtttctgggaccgcgaatacgatgtg
ctggtgtgtaccaccatcgtggaaactggtctggatatttccaacgccaacacgcttatc
gtggaaaatgcccaccacatgggcttgtctcagctgcaccagctgcgtggccgcgtgggt
cgttcccgtgagcgcggttacgcctacttcctgtatccaaagggcgcgacgctgactgaa
atgtcctacgaccgcctggcaacgattgcccaaaacaatgatttgggtgccggtatggcg
gttgcgatgaaggatttggaaatgcgtggcgccggcaacgtgttaggcgcggaacaatca
ggccatatcgctggcgtgggctttgacctgtacgttcgcctcgtcggcgaagcagtggaa
gcctaccgtgcgctcgctgatggcaaagttgttgatggcaccgtcaagggaccaaaggaa
atccgcgtggaccttcccgtggatgcccacattcctgaaaagtacatcaacgccgagcgt
ctgcgtctggaaatctaccgcaagctcgcgcagtccgaatcggaagtggatctgcgcctt
gcggtggaagaaatggaagaccgctacggtcccattccagaagaagtggagcgcctgctg
gctgtgtccagattgcgccacctcatgcgcgaagcccacctcaccgacattgcggtgcag
ggcacgcgcatcaaggtccaccccgttgacctcgccgattcgcagcaagtgcgcctaaag
cgcctgttcccaggcgccacctaccgcgcagccgctaaagcaatccagctgtctttcccg
aaggcaggcaacaaggtcacagatcctttgcttcgcgacgtcgacctcctccagtgggta
gcgaacttcatttccaacatgttcaacttggaggaaatcgatgttcgcggaccacaacca
ggaaagcctaagaagaaatcatcagtgatctccgtcagcctgtaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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