KEGG T02508: WA5

Corynebacterium glutamicum K051: WA5_1152

Entry

WA5_1152          CDS       T02508

Symbol

Rho

Name

(GenBank) transcription termination factor Rho

K03628

transcription termination factor Rho

Organism

cgu Corynebacterium glutamicum K051

Pathway

cgu03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:cgu00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    WA5_1152 (Rho)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cgu03021]
    WA5_1152 (Rho)
   03019 Messenger RNA biogenesis [BR:cgu03019]
    WA5_1152 (Rho)
Transcription machinery [BR:cgu03021]
Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     WA5_1152 (Rho)
Messenger RNA biogenesis [BR:cgu03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     WA5_1152 (Rho)

SSDB

Motif

Pfam:

ATP-synt_ab Rho_RNA_bind Rho_N Spore_III_AA AAA_25 NACHT AAA_22

Other DBs

NCBI-ProteinID:

CCH24372

Position

1265141..1267429

AA seq 762 aa
MTTTDNTAANQGELTALRLPDLRKIAADLGLKGTSALRKGDLINAISAAREGKPTAAAKK
TSPRKAPSRTRATQPSAPVEQAQEAPAQTSTAPASAPSEETPAAPARRGRRRVTTTATTP
EPAAPAQSQPAEAQPAQTQAAQQEELPVAAKESAPATENTQGQAQGQAQGQAQGDEHDDR
FESRSAARRARRNRQRQIHRDGDDNANANTESEQNTPAQNATAQAESEQTAAPAQAEAAE
QNQNDNSESSENRSDNYRNNNRRSRNNRNNRNYRDNNESSDNAGQSSNDDADNNQARSED
NNDDRRSRNNRNNDRNDRNDRNDRDNDDNDDRRNRRGRRNRRGRNDRNDRDNRDNRDNRD
NSNDGDNNQQDELQQVAGILDIVDHNVAFVRTTGYHAAPSDVFVSNQLIRRMGLRSGDAI
EGQVRMNQGGGNHNNHGRNRQKYNNLVRVEMVNGLPAEETRNRPEFGKLTPLYPNQRLRL
ETEQKILTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAISTNNPECYLMVVLVD
ERPEEVTDMQRSVNGEVISSTFDRPPSEHTAVAELAIERAKRLVEQGQDVVVLLDSITRL
GRAYNNSSPASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTV
IFEEFKGTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLNPDEARIMHKLRRILSAL
DNQQAIDLLIKQLKKTKSNAEFLMQVASSAPMAGTEKEEDYS

NT seq 2289 nt +upstreamnt +downstreamnt
gtgacaaccacagacaacaccgcagcgaatcagggtgaactgaccgccctccgactgccg
gatctgcgcaaaattgccgccgaccttgggctcaagggaacctcggcattgcgtaagggc
gatctgatcaacgccatctctgcagcccgcgagggtaagccaaccgcagctgcgaagaag
acttccccacgcaaggccccatcacgcacccgtgcgacacagccttccgcaccggttgag
caagcacaagaagctcccgcgcaaacttcaactgcacctgcttcagcaccatctgaagag
actcccgcagctcccgctcgtcgtggacgtcgccgtgtaaccaccaccgcgaccacccca
gagccagcagcgcctgcacaatcccagcctgcagaagctcaaccagcacagactcaggct
gcacagcaagaagaacttcctgttgcagcgaaggagtccgcaccagctacagaaaacact
cagggccaagctcagggccaagctcagggccaagctcagggcgatgagcacgatgatcgt
tttgagtcccgttctgctgcacgccgagcacgccgcaaccgtcagcgccagatccaccgc
gatggcgatgacaatgcgaatgcaaacacagagtctgagcagaacacccctgcccagaac
gcaaccgcacaggctgagtctgagcagactgcagctcctgcacaggctgaagcagctgag
cagaaccagaacgataacagcgagtcctccgagaaccgcagcgataactaccgcaacaac
aatcgtcgttcccgcaacaaccggaacaatcgcaattaccgcgataacaacgagtcctct
gataatgcaggacagtccagcaatgatgatgccgacaacaatcaggcacggtctgaggac
aataacgacgatcgccgttctcgtaataaccgtaacaacgaccgcaatgatcgtaacgat
cgcaatgaccgcgacaacgacgacaacgatgatcgccgcaaccgtcgcggacgccgcaat
cgccgtggacgcaacgaccgtaacgatcgcgacaaccgagataaccgggataaccgcgac
aacagcaacgatggcgacaacaaccagcaagatgagctgcagcaggtagcaggcatcctg
gacatcgtggaccataacgtcgcattcgtgcgcaccaccggttaccacgctgcaccttct
gacgtgtttgtcagcaaccagctgatccgccgtatgggtcttcgttccggtgacgccatt
gaaggtcaggttcgtatgaaccagggtggtggcaaccacaacaaccatggtcgcaaccgt
cagaagtacaacaacttggtgcgcgtggagatggttaacggtcttcctgctgaagagact
cgcaaccgtcctgagttcggcaagctgactcctctgtacccgaaccagcgtctgcgtttg
gaaactgagcagaagattcttaccactcgtgtgatcgacttgatcatgcctattggtaag
ggacagcgtgctttgattgtgtcgccacctaaggctggtaagaccacgatcctgcagaac
attgcgaacgctatttccaccaacaacccagagtgctacctcatggttgttttggttgat
gagcgtccggaagaagttactgatatgcagcgctccgtcaacggcgaagtgatttcttct
actttcgatcgtccaccatcagagcacactgcggttgctgagctggcgattgagcgtgcg
aagcgcctggtggagcagggccaggacgtcgttgttctgcttgactccattactcgtttg
ggccgtgcgtacaacaacagctcacctgcatcgggacgtattttgtccggtggtgtggat
tccaatgcactgtacccgccgaagcgtttcttgggtgctgctcgaaacatcgaaaatggt
ggatctttgaccatcatcgcaactgccatggtggaaaccggctctgctggtgacaccgtg
atcttcgaggagttcaagggcactggtaacgctgagctgaagctggatcgtaagatctct
gagcgccgcgttttcccagctgtggatgttaatccttctggtactcgtaaggacgagctg
ttgctcaacccggacgaggctcgcattatgcacaagctgcgtcgtattctgtctgcactt
gataatcagcaagccattgatctgttgatcaagcagctgaagaagaccaagtccaatgcg
gaattcctcatgcaggttgcttccagcgctccaatggcaggcacagaaaaagaggaggat
tactcctaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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