KEGG   Caldicellulosiruptor hydrothermalis: Calhy_1883
Entry
Calhy_1883        CDS       T01346                                 
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
chd  Caldicellulosiruptor hydrothermalis
Pathway
chd03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:chd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Calhy_1883
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:chd03021]
    Calhy_1883
   03400 DNA repair and recombination proteins [BR:chd03400]
    Calhy_1883
Enzymes [BR:chd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Calhy_1883
Transcription machinery [BR:chd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Calhy_1883
DNA repair and recombination proteins [BR:chd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Calhy_1883
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 Peptidase_M23
Other DBs
NCBI-ProteinID: ADQ07593
UniProt: E4QDH5
Position
complement(1913228..1916920)
AA seq 1230 aa
MALPRPVQYGKVQRMSYGKVKEVLDLPYLLEIQKKSFQWFLDEGLREVLREISPIKDYSE
TLLLEFVDYYFDGPPKYSEQECKERDATYARPLKVKVRLINKETGEIKEQDIYMGEFPIM
TETGTFIINGAERVIVSQLIRSPGCYFASSIDKQGRKIFSGTLIPNRGAWLEFETDASEL
LSVRLDRTRKVSLTTLLKAFGLYNQQMIFEKFGEDERLKASLEKEANKGELGNPVENALL
EVYRRLRPGEPPNVENARNLLYNMFFDPRRYDLAKVGRYKFNKKLSLWKRIFNKRAAQDV
VDPRTGEILVKEGEVITREIATQIQDAGINEVWVYADEEREFKVVGNNTVKLDRYVEFDV
SDLNIKELVYKPVLEDILKTTNDVSEIKRLIKERERELVPYCLTIDDIFAATSYFLGLKY
GIGTTDDIDHLGNRRVRAVGELLQNQFRIGLARMERVIRERMNIHDIDTVTPQTLINIRP
VTAAIKEFFGSSPLSQFMDQVNPLAALTNKRRLSALGPGGLSRDRAGFEVRDVHHSHYGR
MCPIETPEGPNIGLITSLATYARVNEYGFLETPYRKVDKKEARVTDEVVYLTADEEDTYR
IAQATEPVDEEGRFINQRVTVRFGEEIIEVDKHEVDLIDISPKQIVSVSTSLIPFLENDD
ANRALMGSNMQRQAVPLLTTESPIIGTGVEYRAAVDSGVCILAKKDGVVEKVSADEIVIR
NNDGTKDVYHLLKFKRTNQGTCFNQRPIVRKGQEIKAGEVIADGPSTDHGELALGKNVLV
AFMPWEGYNYEDAILISERLVKEDVYTSIHIEEYECEARDTKLGPEEITRDIPNVGEDAI
KDLDERGIIRIGAEVKSGDILVGKVTPKGETELTAEERLLRAIFGEKARETRDTSLRVPH
GEGGIVVDVKVFSRDKGDELPPGVNQLVRVYVAQKRKISVGDKMAGRHGNKGVISRILPV
EDMPFLPDGTPVDIVLNPLGVPSRMNIGQILETHLGYAAKALGWKVATPVFDGAKEEDIE
EALKLAGLKPTGKTILYDGRTGEPFDNEVTVGYMYMLKLVHLVDDKIHARSTGPYSLVTQ
QPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDVTGRVKTYEAIVKGENIPE
PGIPESFKVLVKELQSLCLDVKLLSEDNKEIELKESVDEDEQPQGLGAFEIGDDEIEDDK
DIQDDKEKFYEDLMNATQEDDQGDIDDIDE
NT seq 3693 nt   +upstreamnt  +downstreamnt
ttggcactacctcgtcctgtgcaatatggcaaagttcaaagaatgagttatggtaaggtt
aaggaagttctggatttgccatatcttttggaaatccagaaaaagtcatttcaatggttc
ttagatgaaggactgagagaggtcttaagagagatatctccgattaaagattacagtgag
accttgcttttggagtttgtagactattattttgatgggccacctaaatattcggaacag
gagtgcaaagaaagagatgcaacatatgcaagacctctaaaggtaaaggtcagacttata
aacaaagaaacaggtgagataaaagaacaggacatttatatgggcgaattcccaattatg
actgaaacaggaacatttatcatcaacggtgcggaaagagttattgtaagccagctcatc
cgttcacctgggtgttactttgcatcttccattgataagcaaggaagaaagatattttca
gggactcttattccaaacagaggtgcgtggcttgaattcgaaacggatgcaagcgagctt
ttgtctgtcagacttgacaggacaagaaaggtttctctcacaaccctgttgaaggctttt
gggctttacaatcagcagatgatatttgaaaagtttggcgaggatgagagattgaaagct
tcgcttgagaaagaagccaataaaggtgagcttggcaatccagttgagaatgcactttta
gaggtatataggagacttagacctggtgagccgccaaatgttgaaaatgctcgaaatctt
ctttacaatatgttttttgatccgagaaggtatgatttagcaaaagtgggaagatataaa
ttcaacaaaaaattgtcgctgtggaagaggattttcaacaaaagagctgcccaggatgta
gttgatccgaggactggagagatattggtcaaagaaggagaggtaattacaagagagatt
gctactcaaattcaggatgctggtatcaacgaggtatgggtatatgcagatgaagagaga
gaatttaaggttgttggaaacaatacagtaaaacttgatagatatgtagaatttgatgta
tctgaccttaacataaaagagcttgtttacaagcctgttttggaagatattcttaagaca
acaaatgatgtttctgagattaagaggcttataaaagaaagagaaagagaacttgttcca
tactgccttacaatagacgatatatttgcagcaacaagctatttcttggggctcaagtat
ggtatcggtacaactgatgacattgaccatttgggcaacaggagggtaagagcagtaggc
gaacttttgcagaaccagttcagaattggtcttgcgcgaatggaaagagttattcgtgag
agaatgaacatacacgatattgatacagtaactcctcagacactgataaatataagacca
gtaacagcagctatcaaggagttttttggttcaagcccgctgtcacagtttatggaccag
gtaaatccactggcagcacttacaaacaaaagaagactttcagctttgggaccaggtgga
ctttcgagggacagagcaggatttgaagtgagagacgtgcatcattctcattatggaagg
atgtgtcctatcgagacgccagaaggtccaaacattggtcttataacctctttggcaaca
tatgcaagggtcaacgagtacggatttttggaaacgccttacagaaaggttgacaaaaaa
gaagcaagggttacagacgaggttgtgtatcttactgctgatgaagaagacacatacagg
attgctcaggcaacagaacctgttgatgaagaaggaagattcataaatcaaagagttaca
gtaagatttggcgaagaaattatagaggttgacaaacatgaggttgaccttatagatata
tctccaaaacagatagtttcagtttcaacatcgcttattccatttttggagaacgacgat
gcaaacagagctctcatgggttctaacatgcagcgccaggcagtgccgcttttgacaaca
gagtctccgataattggaacaggtgttgaatacagggctgcggttgactctggtgtgtgc
attcttgccaaaaaagatggtgttgttgaaaaggtatctgctgatgagattgttatcaga
aataatgatggaacaaaggatgtatatcatcttttgaagttcaaaaggaccaaccaagga
acatgttttaaccaaagaccgatagtcagaaaaggccaagaaatcaaagcaggagaagtt
atagcagacggaccatcaactgaccatggagagcttgcacttggcaaaaatgttcttgtt
gcattcatgccatgggaaggatataactatgaagatgctattttgatttcagaaagactt
gttaaagaggatgtttatacatccattcatatagaagaatatgaatgtgaggcaagagat
acaaagcttggtcctgaggaaataacaagagatattccaaatgtaggtgaagatgcaata
aaggatttagatgaaagaggaatcattagaattggtgccgaagtaaaaagtggtgatatt
ttggttgggaaagttactcccaaaggtgagacagagcttactgcagaagaaagattgctt
cgtgctatatttggtgaaaaggcaagagagacaagagatacttcattgagagtaccacat
ggcgaaggcggaatagttgtagatgtaaaggtattttcgcgcgacaaaggagacgaactt
ccacctggtgtgaaccagcttgtgagagtatatgttgctcagaaacgaaaaatctctgtt
ggcgataaaatggcgggtcgacatggtaacaaaggcgttatttcaagaattttgccagtt
gaagacatgccatttttaccggatggtacacctgttgatatagttttaaatcctcttggt
gtgccatcacgtatgaacattggtcagattttagaaacacaccttggatatgcggcaaaa
gcgcttggatggaaggttgcaacccctgtttttgacggtgcaaaagaggaggatattgag
gaggcattaaagcttgcaggtttgaaaccaacggggaagaccattctctatgatggcaga
acaggtgagccatttgataatgaagtaactgttggttacatgtacatgctaaagcttgta
catcttgttgatgataaaatccatgcacgatcaacaggaccgtattcgcttgttactcag
cagcctcttggaggtaaagctcagtttggtggtcagagatttggcgagatggaagtttgg
gcgcttgaagcatacggtgctgcatatacactgcaagaacttttgactgtgaaatctgac
gatgtgacaggaagagtcaaaacttatgaagcaatagtgaaaggtgaaaatataccagag
cctgggataccagagtctttcaaggtgcttgtaaaagagcttcagagtttgtgtttagat
gtcaaactcttgtcagaggacaacaaggaaattgagctaaaagaatctgtcgatgaggat
gagcagccacaagggcttggagcttttgagataggcgacgatgaaatagaagatgacaaa
gatattcaagatgacaaggagaagttttatgaggatttgatgaatgcaacgcaagaagac
gaccaaggtgatatagatgatatagatgagtaa

DBGET integrated database retrieval system